Protein Info for mRNA_905 in Rhodosporidium toruloides IFO0880

Name: 9273
Annotation: KOG4711 Predicted membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1335 transmembrane" amino acids 154 to 171 (18 residues), see Phobius details amino acids 177 to 199 (23 residues), see Phobius details amino acids 206 to 228 (23 residues), see Phobius details amino acids 274 to 295 (22 residues), see Phobius details amino acids 303 to 326 (24 residues), see Phobius details amino acids 331 to 354 (24 residues), see Phobius details amino acids 887 to 907 (21 residues), see Phobius details amino acids 913 to 932 (20 residues), see Phobius details amino acids 938 to 955 (18 residues), see Phobius details amino acids 962 to 980 (19 residues), see Phobius details amino acids 987 to 1005 (19 residues), see Phobius details amino acids 1025 to 1044 (20 residues), see Phobius details PF10337: ArAE_2_N" amino acids 141 to 463 (323 residues), 190.6 bits, see alignment E=8.7e-60 PF13515: FUSC_2" amino acids 904 to 1040 (137 residues), 54.4 bits, see alignment E=2.1e-18 PF10334: ArAE_2" amino acids 1049 to 1292 (244 residues), 119.4 bits, see alignment E=3.4e-38

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1335 amino acids)

>mRNA_905 KOG4711 Predicted membrane protein (Rhodosporidium toruloides IFO0880)
MSAASTSRPRHQSPRPRFTLDGDDEDAEGTADEYELDDVRAVPSIVVQESEPARKPTSSV
HGGEEEERDLDREERHEVNEDGRERERAGGLREQSEGTSKEVKKDPAAPFDKPEFAAPAG
STIPVALKRKLPSLPGFLSFAWVKPHLSWKGFRPVVRASVAGWCGLLLMLCGPSERMLGQ
ASFLVLIVAIISPASQPIATAIEETFLQFLLVAIAWAWAVIALAIAHVSRSEYQFTQAAF
NAYAAQRYAQPGMSAADVQNAVRVAIFHGEFIEPAASAVCAIFLGVACGFFLWLRGFLGP
GPAIFGVIFAMILTIITLTIGVLFPYPYYSIGLIFMIPFSCQQAIKLACTFLVFPETLAH
QFSDRLIAALQPLQGVIKDTSKMLKANPRTEEWLAFKSIKAGANAAIGGVALMGLSEANL
TREISFARVSGRDLSMILQAMRVLTARTTGFVFFYEVVEKHLHRDVSEAKGGPTADALVV
HLAHSRPGSPDETPGSTRPPSPERERNHDRHESSISMDVHALNHALNKVQHHQDQSYSPV
SSSPLSPAHPLPRQSSSHNLRSREHSSSSLTDLVHATSHGSGSERRSRTRFPEHHFHRMH
YSGANGKRRSRSRGRHGKGSSSHISLPSLLHEVLHPQIDVKPVGVVESTVYADLEDYLHN
PRDEQHIEEIIALLSRASAELLCVLDKSLAHLVETIHRFKSLNDTLRAAFRYNEKEAEQL
IIKSRAQLDELKTALADFRDTRRLDVVKPFAKLFDPYGLDQSHDGEELQAPSHRGLFWAF
QLQHTLIGWSEALIDVFETTLKIESKRRRPRLWFPNWRKAKFQPAVGGQDYGDEDPEVLR
DLNTQAFAAPRNPDYKAPKTLVQIVGVRLYHASEVATRRDVLFGIKSAILLGLCSLPAMF
PGSAWFFYRQRGIWVLIMICLTSNQFLGDVFFGYVVRVWGTLVGAALGLLLWSIAAQKGV
GNPFAVGAVCAVAFPFIFFYRVHMQPPMTAILPSVTAMLVIGYSWQDAHNPTLSSVGSGW
EVAWRRFICVMLGITIAFIWALLPGSSRQKVTIRRAYAKVIGRMGDVICQILSYANCKEG
PTKAPKVIINNLAALRARVNRTVQARAMARYELSLQGPWPSDLYASLQALQMCVGASQAT
QPVLTSSSRREMLDMLGQFCMVLSKLDTNWTKALLHRTQFANPRFLQDVLQTLQLISNAL
DHGQPLPFIYNPLLERFLKPPEVLASGRQLGYGYELQLGDEEFEGLPQHVDFKTISSLDY
LRFSSGVSQAYALINRLDRLMFVAKSLVGENYLLYGLDASTRRQHPHDEEEGEGLLDHHF
HGSAESRRNSFDTQA