Protein Info for mRNA_909 in Rhodosporidium toruloides IFO0880

Name: 9277
Annotation: KOG0254 Predicted transporter (major facilitator superfamily)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 570 transmembrane" amino acids 52 to 77 (26 residues), see Phobius details amino acids 89 to 110 (22 residues), see Phobius details amino acids 119 to 143 (25 residues), see Phobius details amino acids 150 to 170 (21 residues), see Phobius details amino acids 177 to 196 (20 residues), see Phobius details amino acids 207 to 227 (21 residues), see Phobius details amino acids 247 to 268 (22 residues), see Phobius details amino acids 274 to 292 (19 residues), see Phobius details amino acids 313 to 333 (21 residues), see Phobius details amino acids 353 to 375 (23 residues), see Phobius details amino acids 382 to 400 (19 residues), see Phobius details amino acids 406 to 431 (26 residues), see Phobius details amino acids 441 to 464 (24 residues), see Phobius details amino acids 515 to 534 (20 residues), see Phobius details PF06609: TRI12" amino acids 33 to 307 (275 residues), 51 bits, see alignment E=8.6e-18 PF07690: MFS_1" amino acids 59 to 456 (398 residues), 133.4 bits, see alignment E=1e-42

Best Hits

KEGG orthology group: None (inferred from 46% identity to ppl:POSPLDRAFT_50761)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (570 amino acids)

>mRNA_909 KOG0254 Predicted transporter (major facilitator superfamily) (Rhodosporidium toruloides IFO0880)
MTSAPLASPTPSSTMEKDHPLPSPPAEPSRAASTLVESIDSVPKSAKKPLSFWLIFVALC
FSMFLSALDVTAVSTVLPDMANEFKSADYAWIGSAYALTSTALIPWTGGLANIFGRRPVL
VGALLFFALGSALTGAAQSMAMAIAGRSIQGIGGGAILTMAEIIVIDLVPLAERGSYMGI
LGAVWAIASVAGPPIGGGLATAGAWRWLFYLNLPLTGLALGLVLVFLNIKAPQTTLKEKL
EQMDYANVIFVAGATSLILGLTWGGSAYAWSSYHVLAPLILGIFGLVLFFVVEARFVKYP
TVPFDILGHPTALVGYVTTFLHSIAVLAVIYFLPTAYFQASKSVSPIRAGIDLFPICFTI
APFAIFTGASVTVIGKYKAQNVLAWAFMVVGFGLMTLLKWDSKTGMWAGFPIFFGIGAGG
LYAGLNFPVLAPIAVSQQPLAMAFFGFIRSLGQVFGIAIGSTILQNRLAQTLPQEFLERV
GGRGDEAFAAIPGIKDLPEPLRTAVKTSFARSTRTIWFFCLGITAAGLLISLLMKDIPLA
TTTDEERWGLKEREGEKGGEGRAEEGKVDV