Protein Info for mRNA_930 in Rhodosporidium toruloides IFO0880
Name: 9298
Annotation: K00861 RFK, FMN1 riboflavin kinase
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
"Riboflavin kinase (EC 2.7.1.26)" in subsystem Riboflavin, FMN and FAD metabolism (EC 2.7.1.26)
MetaCyc Pathways
- flavin salvage (2/2 steps found)
- flavin biosynthesis I (bacteria and plants) (6/9 steps found)
- flavin biosynthesis III (fungi) (6/9 steps found)
- 5,6-dimethylbenzimidazole biosynthesis I (aerobic) (1/3 steps found)
- flavin biosynthesis II (archaea) (4/10 steps found)
- roseoflavin biosynthesis (1/7 steps found)
- adenosylcobalamin biosynthesis II (aerobic) (5/33 steps found)
KEGG Metabolic Maps
Isozymes
No predicted isozymesUse Curated BLAST to search for 2.7.1.26
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (245 amino acids)
>mRNA_930 K00861 RFK, FMN1 riboflavin kinase (Rhodosporidium toruloides IFO0880) MSSLVTRPKPIQHDPSVVRELIAGPHDGPQPPFPVYLDGWVTRGFGRGSKDLGCPTANLP DSSIAPYAETLSTGVYFGFARVLDPNSATRSSTTSAFPTSSSSNDSKNEHDGVFPMVMSI GWNPFYNNDTRTAEVHVLHTYPSDFYGKQLRVVMLGFIRPEYNYGSMDALIADINTDKLV ALNSVSSPSPSPSSISTELTAAAPAVIPAKRGTNYARFAEDGFFWRESTLEPLPEGVDPE KKREK