Protein Info for mRNA_948 in Rhodosporidium toruloides IFO0880

Name: 9316
Annotation: KOG2641 Predicted seven transmembrane receptor - rhodopsin family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 816 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details transmembrane" amino acids 39 to 63 (25 residues), see Phobius details amino acids 75 to 97 (23 residues), see Phobius details amino acids 109 to 127 (19 residues), see Phobius details amino acids 207 to 228 (22 residues), see Phobius details amino acids 248 to 268 (21 residues), see Phobius details amino acids 280 to 302 (23 residues), see Phobius details PF03619: Solute_trans_a" amino acids 42 to 307 (266 residues), 310.1 bits, see alignment E=7.2e-97

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (816 amino acids)

>mRNA_948 KOG2641 Predicted seven transmembrane receptor - rhodopsin family (Rhodosporidium toruloides IFO0880)
MRWAAWFAALTWLATLANASEAASAAKDGGAGSGSKLPLWVLVSATISAGLSTILSLGTI
WLQLKHYHKPRLQRLVVRILVMVPIYSLSTLISLYSLDLAFFVDAVRDIYEAFVIYCFFS
LLVEYLGGERSLIITLHGREPVKHPFPVSLFLRPMDASDPFTFLGLKRGILQYVQIKPIL
AAATVILKATGTYNDGALRKDSGYTYVSIVYNLSVSLSLYCLAMFWVATNDDLKPYRPMP
KFLCVKGLIFMTFWQGFAVSILVATGLLRTSRYDSEELSVAIQDTLLCLQMPLFAFLHLY
AFSYTDYIDEKHIYSGRLPVWHAFKDAFGYKDLLLDSLTTLKGTGFSYRTFEPASGALHA
EGLSRDRRIRAGLRYSASGQRKYWLNQPGAEEDAFGRRGEGILKRGLAARPLHEIGRVLE
ERLEQHEGYAPLSHEEDEGGVVRVDPEWRAEELARQKATGGGAVVGVGWWEGGRTYDDLS
DGEESEPESLDFADPRDAEEKDMEKLYREARELEYGDWSYPVLDASREAARRRIRDEEDA
LLSGKYGARRRRGKGKDALRPPAQHRPGSYGALAEREPLARQSSSAEPSSSSPRDRNSPR
PPSADPLPSPPTQHQTSAPSDPPTSADHPAALGSSIIHGAHDLLHSAPDDAARLAARLRL
RKKQEQSRLPPDAVDLVVEDTQAEEEEQIRQRRRGEPGGKKTRVYRLAYVPPELRGKDRA
DEEERKKGKEVEDVVPGEQARVKDVVEREEEQDGPLPPPEGTVQGGNEGRKDEVVRIVVE
EEEQQARQAGVDERPPSAPVGGSRGGVLDAADNPWR