Protein Info for mRNA_951 in Rhodosporidium toruloides IFO0880

Name: 9319
Annotation: K16261 YAT yeast amino acid transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 504 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details transmembrane" amino acids 29 to 53 (25 residues), see Phobius details amino acids 79 to 98 (20 residues), see Phobius details amino acids 109 to 130 (22 residues), see Phobius details amino acids 138 to 160 (23 residues), see Phobius details amino acids 195 to 215 (21 residues), see Phobius details amino acids 235 to 255 (21 residues), see Phobius details amino acids 283 to 301 (19 residues), see Phobius details amino acids 332 to 349 (18 residues), see Phobius details amino acids 361 to 386 (26 residues), see Phobius details amino acids 407 to 427 (21 residues), see Phobius details amino acids 437 to 457 (21 residues), see Phobius details PF00324: AA_permease" amino acids 1 to 463 (463 residues), 432 bits, see alignment E=2.8e-133 PF13520: AA_permease_2" amino acids 2 to 424 (423 residues), 147.2 bits, see alignment E=6.9e-47

Best Hits

Swiss-Prot: 43% identical to DIP5_YEAST: Dicarboxylic amino acid permease (DIP5) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

KEGG orthology group: K03293, amino acid transporter, AAT family (inferred from 59% identity to cnb:CNBE0190)

Predicted SEED Role

"Lysine-specific permease" in subsystem YeiH

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (504 amino acids)

>mRNA_951 K16261 YAT yeast amino acid transporter (Rhodosporidium toruloides IFO0880)
MIALGGTIGTGLFVGAGGALSTGGAAGIFLGYTIMGFIVYSMMIALGEMTTLYPVNGAFV
HYASRFVDPSLGFALGWNYWYSWAITLPTEIVAAALVLDYWPGAARVNVAVWITIFFIVI
TAFNFMGVGAYGEAEFWFALLKIVTLLGLILVALIITAGGVPTSDPSEYPIGFRYWNEVP
FQQQNGIPGAWGRFLSFWTVFLQAAFSFLGTEIVALTAGEAENPRRNVPKAIKRVFARIL
FFYVVGVLMISLIVSPNDPGLLNNSGTAASPWVIGIEKAGIKVLPHIVNAVILTAAFSAG
NSDLYAASRTLYGLACDGQAPRIFAKCTKNGLPIWSLIATASVGFLAYMNCGVTGTKAFN
YLYSIGAVTGLISWLVILISYLRFYYGCKKQGFDRNEFPYKAPMQPYASFFGAFMLFVII
IFSDYQVFLAGSWDTGSFLTAYITIPWFFLMLVAWKFWKKTTFVRLDAMDLDSGRRAIDL
MEEEQRALYKAPETWYEKLWAWLM