Protein Info for mRNA_954 in Rhodosporidium toruloides IFO0880

Name: 9322
Annotation: K16261 YAT yeast amino acid transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 555 transmembrane" amino acids 52 to 72 (21 residues), see Phobius details amino acids 77 to 100 (24 residues), see Phobius details amino acids 130 to 149 (20 residues), see Phobius details amino acids 160 to 181 (22 residues), see Phobius details amino acids 188 to 211 (24 residues), see Phobius details amino acids 245 to 266 (22 residues), see Phobius details amino acids 286 to 305 (20 residues), see Phobius details amino acids 335 to 353 (19 residues), see Phobius details amino acids 382 to 400 (19 residues), see Phobius details amino acids 412 to 437 (26 residues), see Phobius details amino acids 458 to 478 (21 residues), see Phobius details amino acids 486 to 507 (22 residues), see Phobius details PF00324: AA_permease" amino acids 49 to 514 (466 residues), 440 bits, see alignment E=1.1e-135 PF13520: AA_permease_2" amino acids 51 to 479 (429 residues), 143.5 bits, see alignment E=9.3e-46

Best Hits

Swiss-Prot: 43% identical to DIP5_YEAST: Dicarboxylic amino acid permease (DIP5) from Saccharomyces cerevisiae (strain ATCC 204508 / S288c)

KEGG orthology group: K03293, amino acid transporter, AAT family (inferred from 57% identity to cnb:CNBM0690)

Predicted SEED Role

"Lysine-specific permease" in subsystem YeiH

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (555 amino acids)

>mRNA_954 K16261 YAT yeast amino acid transporter (Rhodosporidium toruloides IFO0880)
MSARSSEVDVEKDGTVKVEPGTVYGGKEAHDGAEMGAQGGVKRNLKARHLQMIALGGTIG
TGLFVGAGSALATGGAAGIFLGYSIVGMIVYAVMVALGEMTALYPVNGAFVHYASRFVDP
SLGFALGWNYWYNWAITIPTEIVAAALVLDYWPRAAEINVAVWITIFFIVITAFNFMGVG
AYGEAEFWFALIKIVTLLGLILVALIITAGGVPTSDPSEYPIGFRYWNEVPFQQMNGIPG
SLGRFLSFWTVFLQASFSFLGTEIVALTAGEAENPRRNVPKAIKRVFARIVFFYVVGVFM
MSLIVSPNDPGLLNNSGTAASPWVIGIEKAGIKVLPHIVNGVILTAAFSAGNSDLYAASR
TLYGLACDGQAPRIFAKCLKNGLPIWSLVATASVGFLAYMNCGTGGERAFNYLVAIASVT
GLISWLVILITYLRFFYGARKQGIDRDAFPYKAPLQPWASYAAAFMITVIIIFSDYQVFL
ADSWDIGSFLSAYITIPWFFLMLIAWKVWKKTTFVRLEAMDFSSGRRALDLMEEEQQRLY
RPPQTWWEKVWDWLM