Protein Info for mRNA_957 in Rhodosporidium toruloides IFO0880

Name: 9325
Annotation: K07160 K07160 UPF0271 protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 255 PF03746: LamB_YcsF" amino acids 6 to 246 (241 residues), 255.2 bits, see alignment E=3.5e-80

Best Hits

Swiss-Prot: 40% identical to PXPA_THET8: 5-oxoprolinase subunit A (pxpA) from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579)

KEGG orthology group: K07160, UPF0271 protein (inferred from 40% identity to ttj:TTHB195)

Predicted SEED Role

"Lactam utilization protein LamB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (255 amino acids)

>mRNA_957 K07160 K07160 UPF0271 protein (Rhodosporidium toruloides IFO0880)
MPLSATLNCDCGESYGQYTIGDDEGLFPIVDIANCACGFHASDFDVMAKTVLLAKKHAVG
IGAHPSLPDQQGFGRRIMHLPPESFFNCLLYQAGAIDAFLKLNGLKFNHFKPHGQAYVMS
AKDLELARQSAKIAKLYGVPLLGLPGSTHQEACKLEGAEFIPEFYADLQYGDEGQLLAPP
SAAQRHPITPEQVYTRVRKMLETSTWMSLNDGKELRFPEGTDKVSICVHGDFPGAVETAK
AVKRAIEDVAKGNKA