Protein Info for mRNA_971 in Rhodosporidium toruloides IFO0880

Name: 9339
Annotation: KOG2262 Sexual differentiation process protein ISP4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 775 transmembrane" amino acids 98 to 118 (21 residues), see Phobius details amino acids 124 to 147 (24 residues), see Phobius details amino acids 168 to 188 (21 residues), see Phobius details amino acids 200 to 221 (22 residues), see Phobius details amino acids 259 to 275 (17 residues), see Phobius details amino acids 314 to 335 (22 residues), see Phobius details amino acids 345 to 365 (21 residues), see Phobius details amino acids 414 to 436 (23 residues), see Phobius details amino acids 467 to 489 (23 residues), see Phobius details amino acids 495 to 518 (24 residues), see Phobius details amino acids 578 to 598 (21 residues), see Phobius details amino acids 644 to 665 (22 residues), see Phobius details amino acids 676 to 711 (36 residues), see Phobius details amino acids 724 to 748 (25 residues), see Phobius details TIGR00728: oligopeptide transporter, OPT superfamily" amino acids 82 to 745 (664 residues), 299.5 bits, see alignment E=3e-93 PF03169: OPT" amino acids 95 to 744 (650 residues), 479 bits, see alignment E=1.3e-147

Best Hits

KEGG orthology group: None (inferred from 54% identity to scm:SCHCODRAFT_71464)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (775 amino acids)

>mRNA_971 KOG2262 Sexual differentiation process protein ISP4 (Rhodosporidium toruloides IFO0880)
MVNVRNPFRRQDSVDATTAPELHRNASDDLVKTPTDEKEAYNGDVKATDPADYSPDQLED
KNVLANGKERPIETAEDIATRCISLEDDPTMAIHTFRMYFLGIGLTAFAAVLGQIFYFRP
QTVYVSQLFLQVITFFMGRAWSAVLPNASRGKFWAFLNPCPFTLKEHVAIVIMSATAASS
AEAISVFAADKLYYHITPNYGVAIFTLLASQLLGYGIAGLMRSFCVFPTYIVYPNLVPTV
NLFDALHRDKNVAAQKKRLKFFWIVFAVIFVWEWVPEFLAPTLTGISIFCLAKRDSAWFT
RIFGGSNGNEGLGMFALCLDWNYVGSGGGSLGALFTPFTTQVSQYIGVALCIIIFCGMYA
TNAWNASIFPFLSQDLFFANGSQYDQLLILNADYSLNETALEIYGVPWYAASNAIYYLGC
NLAIGATLTHVAIWYWRPIKDAIHGFRTRTLDDPHYQRMLVYKEVPMWVYGAVILCSFGM
AMATCYTGHSQLPWWALIVAILLAFFMFPFVCVIYAITGFKTDVQQLAQMLGAALVPGNS
QANMYFTLYGYNSCAQGLGLARDLKLAQYTKVPPRTTLWVQSLGTVVGAILQLIIMKSVI
NNQREILLDVQGSNIWSGQQVQSFNSQAVSWGALAKHMYGPGSTYFIIPIAMIIGLAVPL
PFYFGHKFFPKLRLNTVVTPIICWCLGYLSVGINSSVFTTMLLGIMSQFVLRRYYATWFR
KVHFLMSAALDGGTQFFVFIATFALFGASGKPVDMPNWALNPGPGLNLDYCQRLT