Protein Info for mRNA_983 in Rhodosporidium toruloides IFO0880

Name: 9351
Annotation: K02974 RP-S24e, RPS24 small subunit ribosomal protein S24e

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 134 PF01282: Ribosomal_S24e" amino acids 26 to 102 (77 residues), 119.3 bits, see alignment E=2.7e-39

Best Hits

Swiss-Prot: 71% identical to RS24_CHATD: 40S ribosomal protein S24 (CTHT_0041970.2) from Chaetomium thermophilum (strain DSM 1495 / CBS 144.50 / IMI 039719)

KEGG orthology group: K02974, small subunit ribosomal protein S24e (inferred from 74% identity to mgr:MGG_10680)

Predicted SEED Role

"SSU ribosomal protein S24e" in subsystem Ribosome SSU eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (134 amino acids)

>mRNA_983 K02974 RP-S24e, RPS24 small subunit ribosomal protein S24e (Rhodosporidium toruloides IFO0880)
MDPNGAVTIRTRKFITNRLLQRKQMVVDVLHPTRPNVSKDELRDKLAAMYKAPKDQVIVF
GFRTQFGGGKSTGFALIYDSKESLKFEPRYRLVRFGLAEKRERTGRKLRKERKNRSKKFF
GTAKVKKANEGKKK