Protein Info for mRNA_986 in Rhodosporidium toruloides IFO0880

Name: 9354
Annotation: K03781 katE, CAT, catB, srpA catalase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 761 PF00199: Catalase" amino acids 45 to 424 (380 residues), 533.9 bits, see alignment E=3.9e-164 PF06628: Catalase-rel" amino acids 474 to 535 (62 residues), 74.1 bits, see alignment 1.3e-24 PF18011: Catalase_C" amino acids 571 to 718 (148 residues), 36.9 bits, see alignment E=4.5e-13

Best Hits

Predicted SEED Role

"Catalase (EC 1.11.1.6)" in subsystem Oxidative stress or Photorespiration (oxidative C2 cycle) (EC 1.11.1.6)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 1.11.1.6

Use Curated BLAST to search for 1.11.1.6

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (761 amino acids)

>mRNA_986 K03781 katE, CAT, catB, srpA catalase (Rhodosporidium toruloides IFO0880)
MSYTGDGMPQTARPTHLNAKLAQLEGFTTRVPLDGDKHVSVFSQAPVDNLDTSVRAGPRG
PTSIDDPVARERISHFDHERIPERVVHARGVGAHGVFKLHTSLSDYTTAQVLTETGTETP
VFVRFSTVLGQNGAAETAREVRGFATKFYTKSGNWDIVGNNIPVFFIQDGIKFVDLIHSG
KPEPQVHLPQAQTAHDSFWDFISLTPESVFMSLFSLSDYTIPRSYRMLKGFGVNTFVLVN
KDGKRTFVKYHWKPHLGQHGLVWDECLKLGGQDPDYLRRDLADAIEAGAYPKYELGVQLI
SEEQELTFDFDILDCTKLVPEELVPITWVGTMELNRNPTNYFAETEQVAFCTSNIVPGMD
YSNDPMLQLRNFSYFDTQISRLGGVNFNELPINRSVCPFISTIRDGQHQERIMAGPNYYP
NRFQTPNAGTEHGKGQNYAHNDAAIAEATKPKEGFLTPAPYKVEGTRGRLRPARFDNHYS
QAQLFWNSMSDVEKEHIIEAAIFELGRCDDREIQRRNILRWNNVDHNLALAVASAFDIDV
PEPEIKNHGKKTDGENSLSLLSANNPSSAVGRRIAVFALDGFDSLQVSGMIAAITALGSI
PNVVGSRKGPCYPRGTKKGDSGASGVINSNFTLETARSTLFDGLFIPDGDENFVKELSSG
RGLHWIREAFAHFKTIGAVGASVPVFAHKALPGITDYKADLSKAYSSKNGVVLAENLAGD
EATLWQKIKGAKDLTGFGAEFVDALSKHRHWYREGAKDVAF