Protein Info for mRNA_987 in Rhodosporidium toruloides IFO0880

Name: 9355
Annotation: K04773 sppA protease IV

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 844 transmembrane" amino acids 49 to 66 (18 residues), see Phobius details PF01343: Peptidase_S49" amino acids 191 to 336 (146 residues), 67.8 bits, see alignment E=5.6e-23 amino acids 469 to 609 (141 residues), 89.3 bits, see alignment E=1.3e-29

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (844 amino acids)

>mRNA_987 K04773 sppA protease IV (Rhodosporidium toruloides IFO0880)
MAEPGPAEQPPSPRPATPGVAAHSAPSGSLVSRIGSSRGYRYAQTAWKWKGLVLGGVAVT
YAVVSWNAEKAKARKRDTIHPNTYLYWKIYDGGIVEAKSAGSNLNYLLSSSQRGAPEEPP
RVMELFEVIRTIKFVENDDRIKGIIADFSHTSIPSVPSYNLGLAQLEEIQDALLELRRVK
QERLGRDEWRTVAWTDTFTSQGQYLLASTFDEVYCQPTGEVPLVGLGSTTPFFGRLARWL
GIEVHAEARKEYKSFVQPYIDEKFTDPQRENTHQLLSDLNDNLLAYIGRNRFSDKSGVNS
LEHVKALTQVGPFSAAQAKEKGLIDGLCYRQDVLDSVLLGKKEEEVGEPKEIEEPKKVEQ
EDALVKAATAAAHEQKPENKLMGFYHYHKVLEKAVEKHMAQETIPIGVVYLQGTIGDVGE
FGTASVVRGLKEAGEDDTIGAVVLRIDSGGGSVIDSDTIWGAVRDLREKYGKTVVASFGN
SSASGGYWVSTHTDAILAAPSTVTGSIGVAALRPTFLQCFFDRLHISLESFFTGSRAQDP
THSLTPAELDRYRKSVDDMYDDFKRRVCEGREISPEVIEGIAGGRVMTGLRAFEINAPKE
LIDHLKGLDIPAAEGVEAAASKEEAPKIQQVEASSSGEGVADTKEVAAAAANGPVATLPE
DQETSPFAVPEVASTPELAAPVDTAKVPSSPSPTDAATPTTNPDSSAESDPAAAHAQQAL
LTSTPEELAASASLAKQKGASSVGAVNGAAGEYEYEPGPYGRGLIDGLGGLRDAAVYACQ
LFIANGIAGYKEENPGVSDDEAIRMLLPDAKFAIMEDGEVAMQVDVTLKRFPVQKSFWQQ
LAVR