Protein Info for mRNA_994 in Rhodosporidium toruloides IFO0880

Name: 9362
Annotation: K08513 VAMP4 vesicle-associated membrane protein 4

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 126 transmembrane" amino acids 103 to 124 (22 residues), see Phobius details PF00957: Synaptobrevin" amino acids 37 to 123 (87 residues), 117.6 bits, see alignment E=8.7e-39

Best Hits

Swiss-Prot: 36% identical to VAMP1_BOVIN: Vesicle-associated membrane protein 1 (VAMP1) from Bos taurus

KEGG orthology group: K08513, vesicle-associated membrane protein 4 (inferred from 74% identity to scm:SCHCODRAFT_80014)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (126 amino acids)

>mRNA_994 K08513 VAMP4 vesicle-associated membrane protein 4 (Rhodosporidium toruloides IFO0880)
MHRSEPYDPYIPGSNPNQPGGGPGPSASGSGVGGKANDKTAKIQQQIDDTVGIMRENITK
VAERGERLDALQDKTDTLAQSAQGFRRGANRVRKQMWWKDMKMRILIAVAIAVLVIVIVV
PIVVKK