Protein Info for mRNA_1004 in Rhodosporidium toruloides IFO0880

Name: 9372
Annotation: K02220 CLB1_2 G2/mitotic-specific cyclin 1/2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 720 transmembrane" amino acids 665 to 684 (20 residues), see Phobius details PF00134: Cyclin_N" amino acids 352 to 478 (127 residues), 142.7 bits, see alignment E=5.2e-46 PF02984: Cyclin_C" amino acids 480 to 571 (92 residues), 101.1 bits, see alignment E=4.4e-33

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (720 amino acids)

>mRNA_1004 K02220 CLB1_2 G2/mitotic-specific cyclin 1/2 (Rhodosporidium toruloides IFO0880)
MQTRRVTRRSLTNQQVENDLANRVGGGPARAASANQAAGPVKQGVALAVTGKSAAGTSAA
AGSRRTVAGTSKGVLADKTAAANAAAGTAAARGKRSAFGDVTNGKGASKSQLAVAGPSKA
AAASSKAAALAPAAAATSSNTVKRTYRTRSSTGGVKQEPADDAAGLESDAMAIDEDVKPA
ARQVRGLRKPTAGVKASTSTTAAASRHPLAAKRANVPAASTSRTAAAAAAKAKTTPPAVR
AARQRREEAEAKHRAAVAELESARRVEEAELKRAREIEELELEDGGRRAKRQKTSEPEPL
EYVDEDEDKEAVDYEQARVSKWETEVEEKPKWVDLDAGDEEDPLMVSTYVVEIYEYLREL
ELTTMPDPDYISNQSEVTWKMRGILVDWLVEIHTKFRLLPETIFLAVNILDRFLSVRVVS
LVKFQLVGVTALFIAAKYEEVVCPSVQNFLFMTDGGFTDEELLKAERYILGIIDFNLSYP
NPLNFLRRISKAEGYDIQCRTMAKYLMEISIVDHRFMAAPPSLIAAAATWLARRVLEKGE
WDANLIHYSGYTEDELKPTAQLMLDYVVRTSPHLSSWAQSLAEGEEAIENPLESSPIEHE
QEHPNFVKKYAAKKFFKASVAMRKWAEAEYAPEPYYDEDGELQRRAWAVKQRELHEYGSL
RYRQLNFLLLACILILVLEIYDSLLLEHDERAAELAEADLLDPDDFDDPPFPCFQHDLLA