Protein Info for mRNA_1006 in Rhodosporidium toruloides IFO0880

Name: 9374
Annotation: KOG4569 Predicted lipase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 647 transmembrane" amino acids 61 to 83 (23 residues), see Phobius details amino acids 95 to 117 (23 residues), see Phobius details amino acids 383 to 403 (21 residues), see Phobius details PF01764: Lipase_3" amino acids 297 to 465 (169 residues), 66.6 bits, see alignment E=1.2e-22

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (647 amino acids)

>mRNA_1006 KOG4569 Predicted lipase (Rhodosporidium toruloides IFO0880)
MSTSATSYAPAAPPPSVPRVHDAPARDERACLHAHLNDVGRIKTHPAGLRSRFRDFSKRN
IVAAYVLFLVQGTLNWLSAFIFSPATAFTDPVNTFATLIVYPVINLVLGVLVAVLYMGSK
LGGGWVIQLISDNYADGYSMANWANPDIFGASSREAIDAARPFLTGQVATTKAQQADPGE
QDADFTQLKTVRTFSVPLAKALLLMSSIVYERNDKLVKEAADIFDRTQKKYTPGTHAYDV
EIKRAEEKLLESEAKIKVQAARWNLAYDGISDLSTVSGPFASIFYTPLGSSDRPFIVLCF
KGTTPVQFSEWLVDATISKTSAAVFFGPGSGKAHSGFYDDLFVRNDGDGGPDGYGSIVRT
LRHIASRMKANSKYSQTEHKIPLFVTGHSLGSALASLCFARFLASENDLGADLELKDCYV
FGTPRLGDGDFASAFEHNLTTPLDRPNILWRVRNHVDIVCSVPPGVTDAESLRGTVSSSS
LLNYAHLGPEIRLFPVLPYSPPYWKANELGAFHEATEVQVTGGHASQQELMQQGGGLDLR
RSSARVGAIEGSRGGKNWLRWAMAALPSPLYDHLPSVYHAHLSNLINSSRSTPISSGRLA
ASLNAFADQTVQDAKNLSDFFGVEAGKAEEVVKSGVQRMKSEAQQRF