Protein Info for mRNA_1022 in Rhodosporidium toruloides IFO0880

Name: 9390
Annotation: KOG1550 Extracellular protein SEL-1 and related proteins

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 928 PF08238: Sel1" amino acids 601 to 637 (37 residues), 18.4 bits, see alignment (E = 1.5e-07) amino acids 638 to 673 (36 residues), 21 bits, see alignment (E = 2.2e-08) amino acids 675 to 709 (35 residues), 31.7 bits, see alignment (E = 9.4e-12) amino acids 752 to 778 (27 residues), 12.9 bits, see alignment (E = 7.6e-06) amino acids 780 to 815 (36 residues), 32.4 bits, see alignment (E = 5.6e-12) amino acids 817 to 852 (36 residues), 17.1 bits, see alignment (E = 3.7e-07) amino acids 854 to 889 (36 residues), 28.8 bits, see alignment (E = 7.7e-11)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (928 amino acids)

>mRNA_1022 KOG1550 Extracellular protein SEL-1 and related proteins (Rhodosporidium toruloides IFO0880)
MGPLDYHFHTPPPPSSTHGTSGSTPRSMTPVPLLDSPSFDPHLPPANPYAAGSSSSVVPS
QPAPPPQQPTRTASGRAKGPPLRSQTMDDSFYGGPGEPSAVTRGLVPPQHAQGQWGAIGQ
GYASSPPKSSGFYNQGNHSSPSLAVVPGSPSSVPPLPSLPASSVNGSTFSPFDVPDLPRL
PAIDDLNIGIENMRFEQRGAGSRGSSDLAPGGSASAGRRYSPNEIGSIGHGPDGAMEIRG
RGDGTASVNSVDSGPGHSFGGAGAGAGGWPAGGVHARTTSASSSRYGGAFDAPLYGKRDS
LGGVEGYADVDSGRPPSGGSYLPYDDAYGGQAPTSNIPQPPPAVPAMQNSPYPGASGDYF
GGSGVPPSPVPPQHASSAFFPPSHMGGYPAGPANHLGFPSQPGPSYQQAPPFQPQPGYGG
TWGPDYQAMAAAQNPYYAAATGQLGLDPSKAAGLAPGPTVGPYGGGLHRGVSSVSSLGVP
PQGSTNSLARSQSSLQIPGGTMRRKPTSASTGTAGSSSSSGPPITKASVDEYRQRIKADP
DPEAQFNFAKYLIEAAKRLNSGANADDKAAKKYRDALVAESLKLIKRLATQGSGLGKPAY
ADAQFFLANCLGNGSLGLQIDHEKAYNLYVQASKQNHSAATYRTAVCNELGAGTRKDYAR
AVLFYRKASALGDTAGMYKLGMILLHGLLGQQRNPKEGLAWLKRAASQADEETPHALHEL
GTLYEKPPPLLSAATLGAKAAAAQLQQQQASGQGVPTLVPYDPAQARELFTQAAQLGYPL
SQFKLGSCYEFGNLTCPVDPRRSIAWYTRAAERGNPDAELALSGWYLTGSEGVLKQSDSE
AYLWARRAANKGLPKAEYAVGYYSEVGIGVKADLEEAKRWYMRAAAQGNKRAMQRLTELK
KLGADKRGAAGGKKRPTRKDAETECVVM