Protein Info for mRNA_1028 in Rhodosporidium toruloides IFO0880

Name: 9396
Annotation: HMMPfam-Domain of unknown function (DUF2411)-PF10304,SUPERFAMILY--SSF48371

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1172 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details transmembrane" amino acids 205 to 224 (20 residues), see Phobius details amino acids 453 to 481 (29 residues), see Phobius details PF10363: RTP1_C1" amino acids 853 to 916 (64 residues), 35.1 bits, see alignment 1.3e-12 PF10304: RTP1_C2" amino acids 1144 to 1170 (27 residues), 23.9 bits, see alignment (E = 2.7e-09)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1172 amino acids)

>mRNA_1028 HMMPfam-Domain of unknown function (DUF2411)-PF10304,SUPERFAMILY--SSF48371 (Rhodosporidium toruloides IFO0880)
MSSASLAGQLKPLLALAGTLLGLSQPSEPPPVGAKKPSLEDVLRNRLQAFYAAGGEGQPS
ALAGTEKETAAAALWILEQIGSALRSSSSLSPSDASAPSTSAPPPPPTAPIFGARDIKAI
GMLAGIVGRWGIGKVSPFGSGWGIARPGPSSVGPKIQEIDEVVEHDVEDSRSKEEELAML
AKRVLAVLSLNEDRLPQRSEGEKQFFAIVAPQLLSALLGALVHLTQNLSAEESWAREALN
RLLRRCPVTVCGHLPPPYTPRICAIFTSPTSYDAALDTTASPGGVRSLLLIVIGTGASSG
GEDEVGVRKLEMVRRVIETRPTDATLDAKAYYANVTAQLLDILRAAASSFLAASLSTSSN
NKGKAPAASSSAPTPSIVPVPIIRAASYVVAHLLVRPAGQGGGGEAKSLLLQALHGPLIP
ISHPDGPLHAKKEDGVLLDSEDLATHLSLLSLLALYAPPLPSFLSTLLAPLLASLFSLLT
HLSRPPLVALSSPTSDALKGVISDEANALVRTFAKGEEVLEAVKAVTAAVERWEKREEFG
VLPRGAILAEADEANQRRVEWGWSSDGAPVLRYAGDGDEAEDNIPVVGGVDEDGEGIDLS
ALSLQVDAVWLVGWLKDVDRKELSAQLFLRWLDEIKVLRGVQDVDGARRSVIRLQLVPQM
VEQLGSDILSEPGEIIAFVAHALDAEVGETDVCKLAAPNAGPGPTLDAPAGLAGLRLVDK
QEEEAKPKIQEVDDAGDTDAGLGTGLGKDEMAMTALTLLLAVLEANETLDTSDTPLLAVI
YLQLDTLASSTSSQLIPPLARETKMVLSLRRASSAFDSAHPESTSADSDDPLAASRVKYR
EALKLLQDPLLPGLSSLVDVFGRQVIGRLLEVYTGARKGDREPKAVGEGEKGTRELDKRL
RVGETLLQVVQRAGEALGMFVDDVVAPLLLVLRTATLPIPLRASAITILATCIQTAPVAL
LQYADVLAEACTTLLSIETVPLAPKSRPSALAPPKVDHLAGKGKKKASPAVLVEEVDSSD
EESDMDEPEPAPLGKDGRPRRAEELPDPTTTASKHPALRRSAAVFLGSLVRTAALQATER
REREERQAWDRIEDETKPFGREGLRMPFGESISSPGGFLMRERRAGGEAVGGLIGAEQLV
RARTVLRYVSETDEDALVREQTRQVLQELEDA