Protein Info for mRNA_1033 in Rhodosporidium toruloides IFO0880

Name: 9401
Annotation: KOG4653 Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1223 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 205 to 224 (20 residues), see Phobius details amino acids 454 to 456 (3 residues), see Phobius details amino acids 458 to 481 (24 residues), see Phobius details PF10363: RTP1_C1" amino acids 838 to 967 (130 residues), 112 bits, see alignment E=1.8e-36 PF10304: RTP1_C2" amino acids 1195 to 1221 (27 residues), 23.9 bits, see alignment (E = 2.8e-09)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1223 amino acids)

>mRNA_1033 KOG4653 Uncharacterized conserved protein (Rhodosporidium toruloides IFO0880)
MSSASLAGQLKPLLALAGTLLGLSQPSKPPPIGGKKPSLEDVLRNRLEAFYAVGGQGRAS
APVGTERETAAAALWLLEHIALALRSSSPLSSSVTSAPSTSAPPPAPTVPIFGARDIKAI
GMMAGIVGRWGIGRVSPFGAGGGTARPGPSSVGPKIQVIDEDVEHDAKDSRSKEEELAGL
AKRVLSVLSLSEERSPQRSEGEKQFFAIVAPQLLSALLGALVQLSQNLSANESWAREALY
RLLCSQSPSAAISHLLTLLGSSPSSLRQPLTTQLSTQLLRPGGVRSLLLIVIGTGASSGG
EDEVGVRKLEMVRRVIETRPTDGNLDAKAYHANVTAQLLDILRAAASSFLAASLSTSSNN
KGKAPAASSSTPTPSIVPVPIIRAASYVVAHLLVRPAGQGEGGEARSLVLQALQGPLIPI
SHPDGPLHAKKEDGVLLDSEDLATHLSLLSLLALYAPPLPSFLSTLLAPLLASLFSLLIH
LSRPPLVALSSPTSDALKGVISDEANALVRTFAKGEEVLEAVKAVTAAVERWEKREEFGV
LPRGAILAEADEANQRRVEWGWSSDGAPVLRYAGDGDEAEDNIPVVGGVDDDDEQPDLSA
LSLQVDAVWLVGWLKNVDRKELSAQLFLRWLDEIKILRGVQDVEGARRSVTRLQLVLQMV
EQLGSDILSEPGDIIAFVAHALDAEVGETDVSQPTASNARQESTLDAPAGLAGLRLVEEQ
EGEAKPKIREVDDAGDTDVGLGTGLGKDEMAMTALTLLLAVLEANDSLDMSNTPLLAVIY
SQLDTLASSTSLQLIPPLAREAKMVLSLRRASSAFDSAHPESTSAESDDPLAASRAKYRE
ALKLLQDPLLPVRAQGLHLLRTLVLDRKTALLSTDPALLPAVLDIFVQAIEEEDSFLYLN
AVQGLSSLVDVFGRQVIGRLLEVYTGARKGDREPKAVGEGEKGMRELDKRLRVGETLVQV
VQRAGEALGMFVDDVVAPLLLVLRTATLPIPLRASAITVLATCVETAPVALLQYADVLAE
ACTTLLSIETVPLAPKSRPSALAPPKVDHLAGKGKKKASPAVLVEEVDSSDEESDMDEPE
PAPLGKDGRPRRAEELPDPTTTASKHPALRRSAAVFLGSLVRTAALQATERREREERQAW
DRIEDETKPFGREGLRMPFGESISSPGGFLMRERRAGGEAVGGLIGAEQLVRARTVLRYV
SETDEDALVREQTRQVLQELEDA