Protein Info for mRNA_1037 in Rhodosporidium toruloides IFO0880

Name: 9405
Annotation: K12160 SUMO, SMT3 small ubiquitin-related modifier

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 102 PF11976: Rad60-SLD" amino acids 18 to 83 (66 residues), 59.3 bits, see alignment E=2.6e-20 PF00240: ubiquitin" amino acids 29 to 82 (54 residues), 25.2 bits, see alignment E=1.1e-09

Best Hits

Swiss-Prot: 40% identical to SUMO1_ARATH: Small ubiquitin-related modifier 1 (SUMO1) from Arabidopsis thaliana

KEGG orthology group: K12160, small ubiquitin-related modifier (inferred from 39% identity to ago:AGOS_AFR697C)

MetaCyc: 35% identical to small ubiquitin-related modifier 1 (Homo sapiens)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (102 amino acids)

>mRNA_1037 K12160 SUMO, SMT3 small ubiquitin-related modifier (Rhodosporidium toruloides IFO0880)
MSDQEQERTEVKPESQHIALKIQGSGFPELVIKVKRTTKLSKMMNAYCDRAGKSLSEVRF
MFEGDKLRPEQLVQDLDFDDGDFDEENPLVIDVAQEAVGGSL