Protein Info for mRNA_1054 in Rhodosporidium toruloides IFO0880

Name: 9422
Annotation: K09419 HSFF heat shock transcription factor, other eukaryote

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 730 signal peptide" amino acids 1 to 34 (34 residues), see Phobius details PF00447: HSF_DNA-bind" amino acids 56 to 159 (104 residues), 108.6 bits, see alignment E=1e-35

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (730 amino acids)

>mRNA_1054 K09419 HSFF heat shock transcription factor, other eukaryote (Rhodosporidium toruloides IFO0880)
MSRKRSTASPIPPATSTGLELALAAPLASSSHQLTVPASALPTKPNKATQRAVPAFLNKL
YSMVSDPETDDLIRWSEDGDSFFVPSADRFGRELLPRFFKHSNFGSFVRQLNMYGFHKVP
HIQQGVLKKDSSEEADMLEFSNPHFIRGQPDLLNMIKRQKAGKADAAAALAGEGSNSSLD
IPTLLTDLAAIRKHQTAISADLKDLQARNHTLWQEALASREKHKKQEETINKILRFLAGV
FGGQVLDAGQGPAVGAVGNGDASGGTVGAGASPRRSADVNANGVVLMPKSRLLLMDVKER
QQERAAALKELDGDEDDEIEEIPLLKTTEDDDDLPTISSSLIASAPTATMGTLSRASSSA
TPFSPKNRFAAIPSPSPAPSATPGASSSLIDPAQYNLSPEALNALLAAAGNNPEALSSFL
TSHRSPAASAASTSLALAAPTSNPFAMLSSATPTPSSSASSSLLPFAPTATSNPLDLPLA
STSSAPALSPSFASAFAENNDALSSVLSEKVNIDQRTAALESQISKLLQHLPEDAREQVE
SDLPLPEGSDPNDWAGVNWSSYVGEGGAVDFDKMLAQLSEMSGGASPSASTSALPAIDYA
DYLNPDAAVTSGAIDPALYAETFPSTSTSTATSTLSALPFQQPFSVTSPAGTASDQMGSP
ASTVTAESASAASTPAADGGAAGRGGTSSRGKKRKSDALGAQSPAASEGGAASPEGAAAG
TRKSARRRKA