Protein Info for mRNA_1055 in Rhodosporidium toruloides IFO0880

Name: 9423
Annotation: KOG0590 Checkpoint kinase and related serine/threonine protein kinases

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 351 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF07714: Pkinase_Tyr" amino acids 88 to 340 (253 residues), 44.2 bits, see alignment E=1.5e-15 PF00069: Pkinase" amino acids 175 to 345 (171 residues), 103 bits, see alignment E=1.9e-33

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (351 amino acids)

>mRNA_1055 KOG0590 Checkpoint kinase and related serine/threonine protein kinases (Rhodosporidium toruloides IFO0880)
MGFAPSPASLAALSPLLHSQYILLEEIGVGGTGFCLKVQRRTDGAVFAAKLIAKTRLSKS
SLIRTSSWGAVPSGFQPDVDGLLVVPLEAYVLRKVDHPGVCGFVDLFADSQYFYLIMEHH
GTSWRSDDASSSLPPSPPITPPSRHLPLDSSDIPQLAVAPPARPAPPPMLRRSSSDLFDC
TERHRRFGEVLARFIFCQIVATVCDLARIGIMHRDIKDENVTVEEGSWKVKLVDFGSAVL
FNPTGPAPIQNEKRFHGTCTYAAPEVFAGRAYDMPPAEVWSLGVLLHILLAGELPFNSPA
DAVQGRRRRTKAVLSAPAVDVLDRCMAVRAEERISLDELLAHPWVCGQYLQ