Protein Info for mRNA_1057 in Rhodosporidium toruloides IFO0880

Name: 9425
Annotation: K00654 SPT serine palmitoyltransferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 747 transmembrane" amino acids 241 to 260 (20 residues), see Phobius details PF00155: Aminotran_1_2" amino acids 340 to 690 (351 residues), 177.1 bits, see alignment E=3.1e-56

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (747 amino acids)

>mRNA_1057 K00654 SPT serine palmitoyltransferase (Rhodosporidium toruloides IFO0880)
MSSTVSSPLEDVAGAARREEAARRRLLLDISSPSRYELVRAPECSAVTVLIAGHHEPPFA
PVRTARHGFISTVPEILAKASARMIKRKSAGASPAASPLAKGLPTVGSMDAATYLSQLQS
RDSAASPSRASSLISYGTGSTMHGRDRSGSDAGRSDSSGDSEQSTRSSTWRGVGSLMPTP
SHLSATRPPTTSFDVDFIPNPQDPYSLRHSEYGYDLDPAHRTISQHTPGVSLKASEEEPS
VWVYLQTYLSYAILIVIGHIRDYVGKRLFPASYSHLRPSNGYAPLFSDFDSFYTRRLKLR
LEDCFARPVTGVAARTATLIDRTPTDFFADFVFTGETTQALNVSSYNYLGFAQSRGPCAD
EAETIVREMGVSLTGSRNDVGTSTLHVQAERLVARFLEVEDSMIVSMGFATNSTTLPALM
CKGCLIISDELNHSSIRFGARLSGAMVRQYKHNDMEDLENLLRECISQGQPRTHRPWKKI
LLIVEGLYSMEGTLVDLPRILELKDIYKFYLYVDEAHSIGALGPRGRGVCDYFGIDPRRV
DILMGTFTKSFGASGGYIAGSHELISALRLTSHAQNYAESMSPPVLAQIVTSMGSIMGPE
ATKLVPALQKLPLEVMDGRDGQDRLRRLAFNCRYLSNGLRKLGFIVYGHQDSPIVPLLIF
APAKMGLFSRMMLERYKIIVVVVAYPATKADLDRILRATDDIGGILGLKLSPHGKHYNIE
EVIANGVEEVRESERRYERAVAAYEHA