Protein Info for mRNA_1060 in Rhodosporidium toruloides IFO0880

Name: 9428
Annotation: K01530 E3.6.3.1 phospholipid-translocating ATPase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1722 transmembrane" amino acids 217 to 236 (20 residues), see Phobius details amino acids 241 to 259 (19 residues), see Phobius details amino acids 612 to 635 (24 residues), see Phobius details amino acids 655 to 681 (27 residues), see Phobius details amino acids 1238 to 1256 (19 residues), see Phobius details amino acids 1267 to 1287 (21 residues), see Phobius details amino acids 1318 to 1340 (23 residues), see Phobius details amino acids 1354 to 1373 (20 residues), see Phobius details amino acids 1380 to 1402 (23 residues), see Phobius details amino acids 1416 to 1438 (23 residues), see Phobius details PF16209: PhoLip_ATPase_N" amino acids 187 to 240 (54 residues), 77.5 bits, see alignment (E = 1.3e-25) TIGR01652: phospholipid-translocating P-type ATPase, flippase" amino acids 190 to 1458 (1269 residues), 1303.1 bits, see alignment E=0 PF13246: Cation_ATPase" amino acids 856 to 937 (82 residues), 34.7 bits, see alignment 3.9e-12 TIGR01494: HAD ATPase, P-type, family IC" amino acids 1148 to 1255 (108 residues), 96.1 bits, see alignment 1.7e-31 PF16212: PhoLip_ATPase_C" amino acids 1204 to 1450 (247 residues), 254 bits, see alignment E=4.7e-79

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1722 amino acids)

>mRNA_1060 K01530 E3.6.3.1 phospholipid-translocating ATPase (Rhodosporidium toruloides IFO0880)
MSSMLRIGRDRRRPESAVLEQFAPDGRNLSDTTHPDYDPATDPELRLRVVRTAADSINVT
NEEEDRRRFKRFASRRQKKAESGSALKPRRTIFGRRKRRISEEPESHDGHAAQSEEGGAA
AEMDDEERADLERRMTRLAAAAEAEESARRQEKQDGGTSGKGWLKKGKKEKGRRVVYVNV
EGVLTDPRGYERNKVRTSKYTLLSFVPKNLTEQFRRIANVYFLVLVILQVFPIFGAASPQ
VAMLPLVAILCITGIKDGVEDLRRHALDNEVNNSAVTRLGDWTNVNVPEEDRPWWAFWRR
PNPNHRVSKGVRKLREKEGSYDVGFLYAEQPGAAESSMTLGGESIQIAGPGARARGDSSA
STMVPADKTDSTYTVDSLAYGAGQSSYPPRLLRSYTLETTPSTDPSYPPSALGRSTRSKR
SSSDVVSYEHATPGTAKWERTLWKKLEVGDIVLLKENDQIPADIAVLATSDSDGVCYVET
KNLDGETNLKPRKALKATMGIANEEDVEHARFWVDSEPPHANLYSYNGVLRWRSREEKLG
LEHPIIEGRARDQGEEMQEAVTINELLLRGCALRNTKWVIGLVVFTGADTKIMLNQGETP
SKRSKIEKETNFNVLVNFFVLVALCVGCAIGGGIYDNQPGRSAQYYEPGGEYSSYAAVNG
LITFGATLILFQNIVPISLVITVELVKTIQAFFIYQDIDMYYEPLDHPCVPKTWNISDDL
GQIEYIFSDKTGTLTQNVMEFQKCAVGGVSYGEGITEAMLGAAKREGRDTSAVDPAQNVE
HLTQRKEQMVRTLRGGFKNRYLQEDKLTLISPPMADQLVARGIEQHQRLVDFWRALAVCH
TVLTERPDESNPDILEYKAESPDEAALVSAARDAGFVFLHRTNQEISLEVLGQPERYIPL
RTLAFNSARKRMSSIVRTPDKRILLICKGADSVIYQRLRDDHDQSVIDTTSKQLEDFANA
GLRTLCISSRYLSEEEFQSWSKQYDKACAAIEDREEAIERACELVEHDLTILGATALEDK
LQVGVPEAIAQLHKAGIKLWILTGDKLQTAIEIGFSCNLLTNVMEIIIISAESEEGTRAQ
IEAALDKVSRSRSGLAQLDTDVHGEKVTGAIKADGFAVVIDGETLRHALDNALKPMFLEL
TTQCNAVVCCRVSPSQKALTVKLVKDGKNAMTLAIGDGANDVAMIQEAHIGVGIAGLEGA
QASMSADYAVGQFRYLTKLLLVHGRWCYIRVADMHANFFYKNIVWTLTLFIFQFFCNFDS
TYLYEYTLLMLFSLVFTSLPVAVLGIFDQDVHAKTALAFPQLYRRGILGKEWTRGKFFGF
MLDGLYQSVIAFGVPYFVFSWSSTLSVTGHDFSIWELGTTVAACAVTAANLFVGLHIRYW
TWMVFVIIIGSTLAFHVWIAIYSQFPTFFFQGEVVYLYGTLNFWTSILIVQVIAIGPRYL
WKYIRSTYFPIDSDVVREMQVLGTCGPGRPRGDLEAGESSGFLPIEATHGVETREHLPLV
QSTDQAAPARLPQQTFSAQTLDSEPTTPWESITPVPRSPVTPQLGPHSPHSPYWSQSPHS
LHSPAPPSPFGPSSYASSPPYASATSTPLGSPPMTSSPAGVPAIRVDDATPRESYVSRLS
SQPSSHHVTSESGEFDVLDYANHRDSQWVAQGVPPVTEADLFARSPLEAAHRQWRSEASS
ATGDTFHSASQSPATSPPPGQQSFSPSHQQQPSYASVGGYAM