Protein Info for mRNA_1078 in Rhodosporidium toruloides IFO0880

Name: 9446
Annotation: K00784 rnz ribonuclease Z

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 954 PF13691: Lactamase_B_4" amino acids 14 to 65 (52 residues), 39.8 bits, see alignment 2.9e-14 PF12706: Lactamase_B_2" amino acids 646 to 877 (232 residues), 56.7 bits, see alignment E=2.5e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (954 amino acids)

>mRNA_1078 K00784 rnz ribonuclease Z (Rhodosporidium toruloides IFO0880)
MTQAAPSGTRYTISVLTTDTVDSAPSLLVTFDAQRYLFNTPEAVSRVALSNKVGLKKVGH
VFLGDLAQSEGLPGLILSSVEGGNDKMVVHGPRGTDHFVASCRFFTRRDRLSLKVESVPP
AVKDDTSSPSLPEPIHADANLVVYGFPLTPSAASPASAPTTNDSAVQTNGEDDAHASLKR
RRSSLSVSPPPPAKSPRRTSPRRSPSPSFDTAAENFNPVRLQGANAVRWRNLVIRDMFRG
TAFEPAPEPLPTTTPSGRHLPGPAYRQKPLPSLPRPFKPASTSYLVVGPKLRGKFQPEKA
IALGVEPGRAFARLVAGQKVWARAKPVDESVLPPGKAETKKEKKARLQKAFEERSKLQDG
EGDGRWVTPEECVGPSVDGAAFLVVNIPSPAYLLSLADLLRPGLLDRDNLGGSATLRGVF
FFLGPDVLADPAFTSYVSALREAFPDIAMHVSSADFVKQGKNEVVYGPSALLNLRLRQVD
EDMFRLPHYCFLTPDALASLPNLPSGLTPLVSNSHFSSALVPAEEGKTPFGNNFALRNFD
FHVPSPQADAEAAQLKGLHKSEETLAKAAAAWEDFVAKAKEARSVVQAEEVERASRPVDS
STPASERNLVVTALGTGSAVPSKYRNVSGTLLHVTPTADGERTQYILFDGGEGTWGQIAR
RFGDGDSSRGEDSREDVLRNLQVIFLSHMHQDHHAGIPTILKQRAKASTSNSARIDLDPP
PQSPLTIVGPASAIIYLREQDQLFDLGLEREGPIRFIDNYSIEPGRAPYEGSQAEAALDD
LKTRLGLTVTAVPVKHRCRAWGAVVTHESGWRAVFSGDTMPCDALVDAGQGASLLVHEAT
IEDDMPEVAEAKGHSTFGQAIDVATRMRARHLLLTHFSARYPKLPPPSAFATDGEAHRPI
VATAFDLMSLRLADFWKVERYREAMDALLSWDEAEDRDDADELSGKDLTANGGD