Protein Info for mRNA_1090 in Rhodosporidium toruloides IFO0880

Name: 9458
Annotation: K12393 AP1M AP-1 complex subunit mu

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 439 PF01217: Clat_adaptor_s" amino acids 9 to 133 (125 residues), 31.4 bits, see alignment E=1.7e-11 PF00928: Adap_comp_sub" amino acids 158 to 424 (267 residues), 301.6 bits, see alignment E=4.9e-94

Best Hits

Swiss-Prot: 72% identical to AP1M1_HUMAN: AP-1 complex subunit mu-1 (AP1M1) from Homo sapiens

KEGG orthology group: K12393, AP-1 complex subunit mu (inferred from 84% identity to cci:CC1G_15504)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (439 amino acids)

>mRNA_1090 K12393 AP1M AP-1 complex subunit mu (Rhodosporidium toruloides IFO0880)
MPGCSLVAILDLKGKSLIQRSYRDDIPPTAIERFLPLVLEQEEEGHYVTPCFSSQGINYL
HIRHNNLYLVALTKKNSNAAEILTFLHKLVSVLTEYFKELEEESIRDNFVIIYELFDEVM
DFGYPQTTESKILQEYITQESHKLEVQVRPPMAVTNAVSWRSEGIRYRKNEVFLDVVESV
NLLVNANGNVVRSEILGAIKMKCYLSGMPELRLGLNDKVMFETTGRTSRGKAIEMEDVKF
HQCVRLSRFENDRTISFIPPDGEFELMSYRLNTQVKPLIWAEALIEQHSGSRIEYVVKVK
AQFKRRSTANNVEVFIPVPDDADSPKFRASVGTVHYVPEKSAFVWRIKQLAGGKEFLMRA
HFGLPSVRGEDMDKRAPISVKFEIPYFTVSGIQVRYLKVVEKSGYAALPWVRYITAQGDD
YSLRTNLPAAKGAKAPGIV