Protein Info for mRNA_1096 in Rhodosporidium toruloides IFO0880

Name: 9464
Annotation: KOG1611 Predicted short chain-type dehydrogenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 267 PF00106: adh_short" amino acids 32 to 219 (188 residues), 99.4 bits, see alignment E=3.9e-32 PF01370: Epimerase" amino acids 32 to 198 (167 residues), 21.2 bits, see alignment E=3.6e-08 PF13561: adh_short_C2" amino acids 34 to 220 (187 residues), 92.2 bits, see alignment E=7.7e-30

Best Hits

Swiss-Prot: 36% identical to STCE_EMENI: Putative sterigmatocystin biosynthesis ketoreductase stcE (stcE) from Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)

KEGG orthology group: None (inferred from 42% identity to scm:SCHCODRAFT_55592)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (267 amino acids)

>mRNA_1096 KOG1611 Predicted short chain-type dehydrogenase (Rhodosporidium toruloides IFO0880)
MSTSASQTVYLGTPSLRIAHPATWLTSIRPAVTGAARGIGFALVSSLVKRPQTVIFAGVR
DVNKADALNALAKDASNLHVVRLESGSVEDAKAVAKTIEETTGKLDVVIANAGISEGYGD
VVDVAPAVFERHFQVNTIGPLVLFQAVASLLAKSSRPQFAAISTAPASLTNLMPMRMTAY
TLSKAALNFLTLRINEEHEKDNIASYAISPGWTQTDMGNAGARAFGLEEAPVKLEDSVAG
ILKIVDGATREKTGGKFWDYTGDELSW