Protein Info for mRNA_1104 in Rhodosporidium toruloides IFO0880

Name: 9472
Annotation: K02540 MCM2 DNA replication licensing factor MCM2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 880 PF12619: MCM2_N" amino acids 24 to 165 (142 residues), 84.1 bits, see alignment E=5.4e-27 PF14551: MCM_N" amino acids 180 to 267 (88 residues), 48.1 bits, see alignment E=6.1e-16 PF17207: MCM_OB" amino acids 277 to 403 (127 residues), 130.1 bits, see alignment E=1.7e-41 PF00493: MCM" amino acids 444 to 666 (223 residues), 334.9 bits, see alignment E=6.8e-104 PF07728: AAA_5" amino acids 501 to 618 (118 residues), 25.4 bits, see alignment E=5.1e-09 PF01078: Mg_chelatase" amino acids 555 to 619 (65 residues), 30.4 bits, see alignment 1.1e-10 PF17855: MCM_lid" amino acids 694 to 777 (84 residues), 92 bits, see alignment E=1e-29

Best Hits

Swiss-Prot: 56% identical to MCM2_XENTR: DNA replication licensing factor mcm2 (mcm2) from Xenopus tropicalis

KEGG orthology group: K02540, minichromosome maintenance protein 2 (inferred from 70% identity to cnb:CNBG2380)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (880 amino acids)

>mRNA_1104 K02540 MCM2 DNA replication licensing factor MCM2 (Rhodosporidium toruloides IFO0880)
MQQVSTPAGSLPGSSPPPATSDFEEEDIYGLEDGDLEEEEDGEDLFDENMGNDYIENRKL
DVYDQADLNDQDDFSDDQDARRAAEASMERRDRRAARAAGAAGERRKARMPGFLASDEED
SEDEGQLLGRRRVRRMYDEPFGDDDAGYDEEMPLEQLGDVRADSLSQWIEEPRTRRTIAR
EFRNFLLTCTDENNESVYGSRITQLGQLNSESLEVSFIHLSDSKPILAYFLANCPSAMLP
IFDEVALDVILLAFPHYTRIHAEVHVRITELPTSYTLRDLRQSHLDALVRVSGVVTRRSG
VFPQLKYVKFDCGKCGETLGPFYQDAASEIKISFCSACNGKGPFTVNSEQTVYRNYQKLT
LQESPGSVPAGRLPRHREVILLWDLIDSAKPGDEIEVTGIYRNNFDTSLNVKNGFPVFST
VIEANHVNKKEDLFASFRLTEDDEKAIRKLARDERIGKRIIKSMAPSIYGHDDIKTAVAL
SLFGGVPKDINRKHRIRGDINVLMLGDPGTAKSQFLKYVEKTANRAVFATGQGASAVGLT
ASVRKDPVTREWTLEGGALVLADKGVCLIDEFDKMNDSDRTSIHEAMEQQSISISKAGIV
TTLQARCAIVAAANPIRGRYNPTIPFSQNVELTEPILSRFDILCVVKDEADPSVDEMLAN
FVVGSHLRSHPNFDAETDEVNASGMIDADLIPQDLLRKYIQYARDRVKPQLHMMDQEKIS
WLYSELRRESLSTGSYPITVRHLESMIRMAEASAKMHLREYVRSDDIDLAIQVMVGSFVS
AQKSSIKKQLQRGFRKYLRVATDNEEVICFLLGNLVKDRVRYLAVKNGAQPDSVSIRVEE
LARKAAEIDIHDIEPFFSSALFSKVHRYSRKGDSIYKSFV