Protein Info for mRNA_1114 in Rhodosporidium toruloides IFO0880

Name: 9482
Annotation: KOG1396 Uncharacterized conserved protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1149 transmembrane" amino acids 732 to 753 (22 residues), see Phobius details PF07738: Sad1_UNC" amino acids 229 to 352 (124 residues), 85.9 bits, see alignment E=1.3e-28

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1149 amino acids)

>mRNA_1114 KOG1396 Uncharacterized conserved protein (Rhodosporidium toruloides IFO0880)
MTVSTATEGVGGTASASQATATPTETPTQLPTTSSTPSPSSDSSLPPAAEPSSPPPPEPS
PSVLPDLPVVEELPLTEVPPAPEFLSFNEWRERYAVAADPSVARRAKKAAQRARQDVVGA
SASGANGAAYDGDGADLGSLFVGGDEAGSKVGDRLVFQDIGSVPGVQVGVIDVIETDSIA
VTPTSDMANPIQPLPDVGTGEPNDPLLLLKDRSNYAAFECAAMVHRSSRQSKGASAILVE
KKDRYMLTPCSANPKFVDVELCDEIQIDTLVLANFEFFSSTFKHFKASCSVDYPGKPADW
HDLGTFRARNVRGIQVFKPIRNPHFCRYLRIDFLSHFGSEFYCPVSVLRVYGYTQLDAYR
ESERKAKAIEEALAAAELIEEEVAQHERVLEDALRVEVDKLERLEDAGAKTVNATVEITP
SPSTVPPIAESGSPSPAPSSSASSPSNVSKLSQAVPSPLSVATSQPLPTASTEYSPSSTL
SSTTAPPAATTSPIEADTHTTSSATPFSTVAASTDTSDSASSATVDVAEPASSSNTATSS
ATRIEPSSSSSIAVTPVSTLSPSSSSPTAEVPTSSNSSVPDATPNPLSGRPVTPSDIPVV
ISRPPPAPRNDTHSASQPHVPLPPPSRPPVIQPTQPGESIYGTIMKRLTSLEHNQTLAMH
FIEAQSSMLREAFGRIERRLTDIEGSRGRQEQSIRQALLDLEQQRVELERERLALSTQVS
KLTQEVRLEKRLTVAQLIGLLLLVIFVGFTRGIPTSPFLHLASTHLDTKRETKRTQADLL
ADRLGEAVGSRLQTEAVDEGEYRILVSAAESSTNAPHLADAPAAPRRGHRISPSVSLSRY
NGTSSAFKRYPSISKAGPRRHYGIGSSKATNGKGDSSRARPWSPPTRHASAPPEEPPAMI
LDGKAAKRRRPLADLAGSDGHAFEFPARSSSTQPSSTSAVGSIATGAASSSASLSPIPFP
STSLSSPAPTFSPSAAPHPQLDLPINLGYLSTSLGPPAERSDSAFSPASTNGFVGDDERD
EGGYHTYSSDEEALASVFPSRTPSRDQMRAAALASSSPSSPGTTASPRIRPPKPQVPLRP
ATSMGFRDERATQKDKSRRTSRGPEAKQAANSDDLPPLGPAPTISTPSPPPETPAPSSLV
QHKRSDTLA