Protein Info for mRNA_1120 in Rhodosporidium toruloides IFO0880

Name: 9488
Annotation: KOG1612 Exosomal 3'-5' exoribonuclease complex, subunit Rrp42

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 331 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 121 to 145 (25 residues), see Phobius details amino acids 153 to 177 (25 residues), see Phobius details PF01138: RNase_PH" amino acids 44 to 187 (144 residues), 62.1 bits, see alignment E=4.2e-21

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (331 amino acids)

>mRNA_1120 KOG1612 Exosomal 3'-5' exoribonuclease complex, subunit Rrp42 (Rhodosporidium toruloides IFO0880)
MASTASLFSHAELTFAQVPLSHSAAIAHPSDDAPLRPDGRTPLQFRDIILQTGVSQAQGA
LGSAKVVVEDAAGAGGGSSTEVWAGVRGEVENMDEEEGGKVVVSLECAPTALPSLKPDLP
IHLASILTSLFSASTLPPSLLSQLVVLPKSRSWTLYLDILILSSSGGNIIDLAILAARSA
LATARIPQTRAIGFEEGDGTATAALGEGAGMTSDEGFSGLVKGGKGGSKAVDFELVDGGS
QGVRLQGWEELPIGLTLNLINQLPHLDATVLEESASSSQLVACFLPSGTICGVTQLGEGE
IEFARLMPLVTEAGKYAQELLKSVNAKLKDA