Protein Info for mRNA_1129 in Rhodosporidium toruloides IFO0880

Name: 9497
Annotation: K12391 AP1G1 AP-1 complex subunit gamma-1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 849 PF01602: Adaptin_N" amino acids 24 to 582 (559 residues), 457.4 bits, see alignment E=6.6e-141 PF02883: Alpha_adaptinC2" amino acids 735 to 839 (105 residues), 70.2 bits, see alignment E=1.9e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (849 amino acids)

>mRNA_1129 K12391 AP1G1 AP-1 complex subunit gamma-1 (Rhodosporidium toruloides IFO0880)
MTGYYNLKTLIKAIRATKTIADERALIVKESAAIRSSFREEDSHARHNNVAKLLYIHMLG
YPAHFGQIECLKLVASPRFTDKRLGYLGIMLLLDENQEVLTLVTNSLKNDMNHSSAPTVS
LALCTFANIASEEMARDLVTEIERCLGSSNAYIRKKAALAALRSLYKVPELVDHFEGRAI
SLLSDRVHGVLLTGVTLVTEMVRLVGGEPFRSAVPLLVRHLKALVTTNYSPEHDVSGITD
PFLQVKILRLLRLLGKGDVEASETMNDILAQVATNTEAAKNVGNSILYETVLTILEIEAD
SGLRVMAINILGKFLGNRDNNIRYVALNTLLKVVSMDTNAVQRHRAIILDCLRDGDISIR
RRALELSYALINESNVRVLTRELLAFLEVADNEFKLGMTTQVCSAAERFAPNRRWHIDTV
LRVLKLAGNYVREEVLSSFIRLVTHTPDLQSYTVYKLYTALRADVSQEALTLAGVWTIGE
YGDVLLQGGTTVATGEDEESQAATSEAVSEKDVLDLLEKILVSPYTNTNIRQFVLTALAK
LSTRFSQPDQIARISKIMHGYDSSVELELQQRAIEFGKLLTLDSVKTGVLERMPPPEIKA
TVMGTVSEKRPVGSLRRDKDALLDLMGDEAASPTTAGAMPAAQQQTTQDLLADIFGNGDS
TPASAAPQATAPASSGVNDIMSLFGSTSLSPQPTGASASSATPSASSDLFSAMSTTPAAP
SPAPAASPAPSGPTAHEAYNRNGLRITLTAVRDSNNRNVANILAKFTSTQLVSGVNFQAA
VPKTQKLQMLAMSKQDVQPGATETQQLRVMVAAPGALVRLRLRIAYSVAGQQHQDQTDFS
FPAELMAGP