Protein Info for mRNA_1138 in Rhodosporidium toruloides IFO0880

Name: 9506
Annotation: K12598 MTR4, SKIV2L2 ATP-dependent RNA helicase DOB1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 994 PF00270: DEAD" amino acids 69 to 216 (148 residues), 63.6 bits, see alignment E=4.1e-21 PF00271: Helicase_C" amino acids 359 to 465 (107 residues), 27.1 bits, see alignment E=9.1e-10 PF13234: rRNA_proc-arch" amino acids 519 to 789 (271 residues), 304.3 bits, see alignment E=2.4e-94 PF08148: DSHCT" amino acids 818 to 982 (165 residues), 179.6 bits, see alignment E=7.8e-57

Best Hits

Predicted SEED Role

"FIG005666: putative helicase" in subsystem Cluster-based Subsystem Grouping Hypotheticals - perhaps Proteosome Related

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (994 amino acids)

>mRNA_1138 K12598 MTR4, SKIV2L2 ATP-dependent RNA helicase DOB1 (Rhodosporidium toruloides IFO0880)
MEITAKTTVKASAGLGGGEAQKDGEEEGLVLQHQVRHQVALPPNYPYVPISSHVPPAEPA
RTYPFELDPFQKVSVASIQRNESVLVSAHTSAGKTVVAEYAIAQCLKEGQRVVYTSPIKA
LSNQKYREMLAEFGDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEIMREVAWVIFDE
IHYMRDKERGVVWEETIILLPHKVHYVFLSATIPNAMEFAEWICTIHQQPCHVVYTDYRP
TPLQHYLFPAGADGIHLVVDEKGNFREDNFAKAMGALGGTSKGEDPASIDSGKGRKGKTK
KGSAKGGPSDIYKIVKMIMVKNYNPVIVFAFSKRECEGLALQMSKLEFNTDEERDMVQTV
FTNAISGLSDDDRQLPQIEHILPLLKRGIGIHHGGLLPILKEVIEILFQEGLLKVLFATE
TFSIGLNMPAKTVVFTNVRKFDGRDFRNLSGGEYVQMAGRAGRRGLDDRGIVIMMTDEKL
DPAAAKGMVKGQADRLDSAFHLGYNMVLNLMRVEGLTPEYMLERSFYQFQNTASVPKLED
ELRLLDEQRASIVIPDEDNIADYYDLRQQLDILNKDLRDVLNHPTYALPFLQPGRLVRVK
HEDLDFGWGVVVNYQKRVGAKGKPLPADEPPQNQYIVDVLLHLAKGTAPVLTAKNKNSTS
SISTIRPCPPNEEGEFAVVPVLLSTLDGISHIRIFLAKDLKPLEARMQALRSVKEVKRRF
VDGIALLDPVENMGIVDEAFKKLLRKIEILESRLVSNPLHSDPNLPALYEQFSAKEELKT
KIRATKRKVAAAHSILHLDELRSRKRVLRRLGFFSNEDVVEQKGRVACEISSGDELLLTE
LLFAGTFNELTPEQCAALLSCFVFDERSEQTSKLKEELAAPLRVLQEAARRIAKIAVESK
MPLVEDEYIAGFKPELMDVVHAWCCGAKFSEICKMSDIFEGSLIRVFRRLQELIRQMSMA
AKAIGSEELQDKFNKALACLERPSSVAFAASLYL