Protein Info for mRNA_1148 in Rhodosporidium toruloides IFO0880

Name: 9516
Annotation: K02923 RP-L38e, RPL38 large subunit ribosomal protein L38e

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 84 PF01781: Ribosomal_L38e" amino acids 2 to 76 (75 residues), 102.3 bits, see alignment E=6.3e-34

Best Hits

Swiss-Prot: 59% identical to RL38A_SCHPO: 60S ribosomal protein L38-1 (rpl3801) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: K02923, large subunit ribosomal protein L38e (inferred from 58% identity to lbc:LACBIDRAFT_150531)

Predicted SEED Role

"LSU ribosomal protein L38e" in subsystem Ribosome LSU eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (84 amino acids)

>mRNA_1148 K02923 RP-L38e, RPL38 large subunit ribosomal protein L38e (Rhodosporidium toruloides IFO0880)
MPAEVKEIKTFLEYARRKDARQVTIKKSAAKKAGAGQVFKFKLRCSKYLYTFSLRDADKA
EKLRQSLPPTLKVNDVDGPVKAKK