Protein Info for mRNA_1166 in Rhodosporidium toruloides IFO0880

Name: 9534
Annotation: KOG2533 Permease of the major facilitator superfamily

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 503 transmembrane" amino acids 57 to 74 (18 residues), see Phobius details amino acids 97 to 116 (20 residues), see Phobius details amino acids 127 to 146 (20 residues), see Phobius details amino acids 153 to 177 (25 residues), see Phobius details amino acids 189 to 209 (21 residues), see Phobius details amino acids 228 to 252 (25 residues), see Phobius details amino acids 295 to 318 (24 residues), see Phobius details amino acids 327 to 347 (21 residues), see Phobius details amino acids 354 to 374 (21 residues), see Phobius details amino acids 380 to 403 (24 residues), see Phobius details amino acids 415 to 435 (21 residues), see Phobius details amino acids 447 to 468 (22 residues), see Phobius details PF07690: MFS_1" amino acids 65 to 431 (367 residues), 84.5 bits, see alignment E=3.5e-28

Best Hits

Swiss-Prot: 36% identical to YHDC_SCHPO: Uncharacterized transporter C1683.12 (SPBC1683.12) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: None (inferred from 42% identity to ncr:NCU08407)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (503 amino acids)

>mRNA_1166 KOG2533 Permease of the major facilitator superfamily (Rhodosporidium toruloides IFO0880)
MSTTSSAGVKEHDAEKGQFNSTGLAYAVKDIDENSSDEELLAYQISPQETRSLLRRLDSF
LAPMVMILYLISFLDRSNIGNASTGGMFVDIGAPKNGLSVASSIFYCTYVSFEPMWTTIL
KSARPSVLLPAVTTVWGAIVLGNGFIQNYPSLIALRLVLGFLESALTPCLFLALTFFYSR
TELAWRTSLMFVSAATSGVVGGLIGAGFLKLDGRLGLEGWRHLYIWEGVITILIGLASIF
FIADSPASAWYLSPRQKLLMRARDIQARQYTGSDAFSWAEVRKAFLEPIVYLSGLTQLGF
DICLYGFSTFIVVIVKALGYSTINSQLLTAPIYAWAAIVYLAAAHICDKKDVRYWLILPL
GLITCIGYILLVAVQHSTAVSLFACFLCGTGIYTAVGINVSWLNSNIAGVRKRSTAIGIQ
QLIGNIGGVIAGQIYRSQDKPHYRLGHAVSLGSMAFGLAMMTVMTWLLRHRNAKKLALTE
AEKEEQDRQGVTGDAHWSFMYVW