Protein Info for mRNA_1167 in Rhodosporidium toruloides IFO0880

Name: 9535
Annotation: HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 848 transmembrane" amino acids 578 to 590 (13 residues), see Phobius details PF00172: Zn_clus" amino acids 28 to 60 (33 residues), 32.3 bits, see alignment (E = 8.9e-12) PF04082: Fungal_trans" amino acids 231 to 419 (189 residues), 81.4 bits, see alignment E=5.9e-27

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (848 amino acids)

>mRNA_1167 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701 (Rhodosporidium toruloides IFO0880)
MLSQRRPEKDGRKTVSRGTEAVRRNATRACQQCRRRKSKCDGKSPCSTCTLYHDTCAYSG
ETDGRKPASKSYVTALEERVKVLEALLTQAGVSDDAATLEGAVDRGDDGAGLGEGVQADL
GLDRLKLDEETLEFTNYGPTSAFQHLPEPLASPNNDDSRALSQSPGAPSSAQTTSFFRRR
ASTLNAASPPFPSYRAATSPLPSGPLDWQRNLPSAIAQKWDAELHEDLLVRFFRYFNGWC
HWVEEAAFRHDLAVCLTIDPSRPTPPVRTSAYSPLLHNALLSLACSLSDGERLRDRSDAK
ELSGRAKALVEDEGERPMLSTLQGLLLLGSYHSGNGLQGLGYLYSGIAFRMSHTLGLGID
ASAYVSRGLLTEETRNARDRVMWCAYVQDKLWSSYVGRNPSILRNIIEIALPVVDIDCDK
EPWSPLPAAGDSPTKPLSSLLSSTFHWTCRLAVIEEKILVLVYALRVQLYSAQVLNRVSE
LHLELETWASSLPVDLRIAPQTSKPPPPHVCMLNCMYQFCIILLHRPYYVRHNSPNNVPI
NDSAIKRCNSAATRIVALFELYQRSPGLRYAPISATQIAFAAATTHLLALVNADAAAQKK
RATDAREATRSCSRILREMGRAWPCAVQTADIFDGLVSKWMPEQPEEEQSANEAGSSNAA
APAQADPLQNAAVQALDPHSDLAKELLRLGWTPPVQANAAQQADSSTLPPAPPILPNPPL
SAYSQAAQPSTSASNAFPPQLPFSTAPPVHAPFPAQLASSPSSNPFDRFGSWPFFAAPAF
SSSTAPTQQPLADDVFAGLLSTEGRGAGEAVYGGGTEVDYSTFFGQPPLGGSQGPSGWSA
FGTGAGQQ