Protein Info for mRNA_1185 in Rhodosporidium toruloides IFO0880

Name: 9553
Annotation: KOG1399 Flavin-containing monooxygenase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 575 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF07992: Pyr_redox_2" amino acids 8 to 194 (187 residues), 36.6 bits, see alignment E=9.4e-13 PF00743: FMO-like" amino acids 8 to 195 (188 residues), 37.4 bits, see alignment E=3.5e-13 PF13454: NAD_binding_9" amino acids 10 to 101 (92 residues), 25.2 bits, see alignment E=4.5e-09 PF13450: NAD_binding_8" amino acids 11 to 67 (57 residues), 33.1 bits, see alignment 1.7e-11 PF13434: K_oxygenase" amino acids 96 to 215 (120 residues), 23.7 bits, see alignment E=7.8e-09

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (575 amino acids)

>mRNA_1185 KOG1399 Flavin-containing monooxygenase (Rhodosporidium toruloides IFO0880)
MAPKSVLKVVIIGGGISGIAQAVRLQEALGSKVDFTIYEREAEVGGVWRDSTWPGTAVDV
PIHLYCLYSHLNPDFSSKWAGRDEVLGYWKRIVARHRLSDRFVFRTEFVSSRWDSSTQTH
TITFRRLPSNEFFTVAADILISATGALNKPIVPSVPGREKFKGVQWHSSRWNGEVRLEGK
RIAIVGNGSSGIQVVPNIVDLPGIEIVQFIRSPGYFRPKVNFSYTPFQRFIFRYVPFALR
LYRWKQFLEYDRNILSRGNGTWTSDLRARMTTNIITYMKSQMPEKYYDALIPKYPMHCKR
VAYDAGWLASLNKPNVSLISDPIVAVDETGLLTSTGQHIEVDYIAWATGFEVSETGVGLN
HSVFGEDGKEVRETWKENNGAYGYLGVAVPRVPNYFTVLGPNAISQSWGNTINNNTHFIA
RIVRGIYDRGLASIVVKDSVMRDYNKYITSRLDQTSLASPECGSSWYKDPVTGRLVAPAP
WGATELWTRTRKIKWEDWLCRRKLPSGEIIEVDVRSPRSWTPWSILMDWVAARLQKWLIR
LMTEVEPGRVGGVGKVELLKEAGEGKKQVVEIEVR