Protein Info for mRNA_1186 in Rhodosporidium toruloides IFO0880

Name: 9554
Annotation: K20410 MAPKAP1, SIN1 target of rapamycin complex 2 subunit MAPKAP1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 953 PF16978: CRIM" amino acids 478 to 631 (154 residues), 139.1 bits, see alignment E=1.1e-44 PF16979: SIN1_PH" amino acids 830 to 940 (111 residues), 94.5 bits, see alignment E=4.8e-31

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (953 amino acids)

>mRNA_1186 K20410 MAPKAP1, SIN1 target of rapamycin complex 2 subunit MAPKAP1 (Rhodosporidium toruloides IFO0880)
MSILTDKDFLLHTVQLAYIRHVLPSHAPLSTSTAFAGGSSGPYNLISFPPAHELRRKNVY
VALSGAADADRWPEVQQSSSGRRSPPLAPVIEREQKGAEVAVGAGRRRRAQQGTGGAQLG
YTQTIVGKGSGVGSAGMRVGGKARTWKGKGKLVEEDAEDGEAESLERPPGFAVHRQSVSS
SSSPPTRILAHPPPPPVVVHSPVRTPRDRVSTSPPPLRAPDSSAADGRRPRFADAAQVVG
TSAAPPHQGPDPASPSSPGDYPSRPLATVSVPSSEASYISPSLASSPSQTPASSQVLRQP
LQPTAEPPPDSPAGPAQVAAQSQASSGISLFGTSVAQGPGGQPQETLEPPPPPPVVDPAQ
PAPAPAGPVFQLPPGLKVRERRRVNIHGLGPLVPLNPAAEKPKEEEQAVAAPPPLPVAPP
TQPVAPPAPPSENTLAVPPPSRSPASSPASDAKPSPLFPPRSAYLSTPPPRPLPSGQKSA
LSLLLSSASTASSKPYNPFSRLYQSCISRSPGPDPLTLNLALYFPFSSRPSQPLKIRVKR
DVTVEEVIGAGLWAYWEDEGRKPKLDGESIGVKPGEAEEGRETTRWNLRIVEEDGEVDED
FPALDRMRNVSAFSFTEFAIVRATGQQIEDNAAKQASIVRRPSRILSTGPTATASGAPSR
RHSNVPTPHGPGTATPVPTAKNGADIIEPSTCADGSALAVPVELKVEVMLQYEERSEMEV
QVPSDMYIADLLDHICKRISPIPPPHPRNCALVVRLSDGDIVAPLDRTVASLVGEHHTLV
LVSKSQVGAVGLRRRDARSADPSESIFTSAQPNQPAQRGLPTALEVVAPYQHFNVLRKLP
MSLGGRHARVIAIDGDYLHFMPPDDGRGGGGGTHLLGGTSGRTTSFHISQVHTCKISRRS
ASSFKIVVHTNRSVDKRYDFEAESPALAQEIVKQIRAVMQAYQAEHPKTRIRL