Protein Info for mRNA_1189 in Rhodosporidium toruloides IFO0880

Name: 9557
Annotation: K02183 CALM calmodulin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 142 PF00036: EF-hand_1" amino acids 11 to 39 (29 residues), 36 bits, see alignment 1.4e-12 amino acids 47 to 74 (28 residues), 34.2 bits, see alignment 5.3e-12 amino acids 84 to 111 (28 residues), 37 bits, see alignment 6.9e-13 amino acids 120 to 140 (21 residues), 26.3 bits, see alignment 1.7e-09 PF13405: EF-hand_6" amino acids 11 to 40 (30 residues), 36.4 bits, see alignment 1.3e-12 amino acids 84 to 113 (30 residues), 36 bits, see alignment 1.8e-12 PF13499: EF-hand_7" amino acids 12 to 72 (61 residues), 57.9 bits, see alignment E=5.8e-19 amino acids 82 to 140 (59 residues), 56.9 bits, see alignment E=1.2e-18 PF13202: EF-hand_5" amino acids 13 to 36 (24 residues), 26.1 bits, see alignment 2.2e-09 amino acids 48 to 72 (25 residues), 21.9 bits, see alignment 4.8e-08 amino acids 86 to 109 (24 residues), 27.2 bits, see alignment 9.9e-10 amino acids 123 to 140 (18 residues), 14.9 bits, see alignment (E = 7.5e-06) PF13833: EF-hand_8" amino acids 24 to 74 (51 residues), 47.7 bits, see alignment E=5.6e-16 amino acids 81 to 101 (21 residues), 15 bits, see alignment 9.4e-06 amino acids 97 to 140 (44 residues), 44.9 bits, see alignment E=4.4e-15

Best Hits

Swiss-Prot: 91% identical to CALMB_HALRO: Calmodulin-B from Halocynthia roretzi

KEGG orthology group: K02183, calmodulin (inferred from 91% identity to cin:445635)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (142 amino acids)

>mRNA_1189 K02183 CALM calmodulin (Rhodosporidium toruloides IFO0880)
MDQLSEAQIAEFKEAFSLFDKDGDGTITTRELGTVMRSLGQNPTEAELQDMINEVDADGN
GQIDFPEFLTMMARKMRETDSEEEVREAFKVFDKDGNGFISAAELRHVMTNLGEKLSDQE
VEEMIREADVDGDGQINYDEGG