Protein Info for mRNA_1204 in Rhodosporidium toruloides IFO0880

Name: 9572
Annotation: K11253 H3 histone H3

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 136 PF00125: Histone" amino acids 1 to 132 (132 residues), 176.4 bits, see alignment E=1.7e-56

Best Hits

Swiss-Prot: 97% identical to H31_USTMA: Histone H3.1 (HHT1) from Ustilago maydis (strain 521 / FGSC 9021)

KEGG orthology group: K11253, histone H3 (inferred from 95% identity to lel:LELG_03447)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (136 amino acids)

>mRNA_1204 K11253 H3 histone H3 (Rhodosporidium toruloides IFO0880)
MARTKQTARKSTGGKAPRKQLAAKAARKSAPQTGGVKKPHRYKPGTVALREIRRYQKSTE
LLIRKLPFQRLVREIAQDFKTDLRFQSSAIGALQEAAEAYLVSLFEDTNLAAIHAKRVTI
QPKDIQLARRLRGERS