Protein Info for mRNA_1219 in Rhodosporidium toruloides IFO0880

Name: 9587
Annotation: KOG3202 SNARE protein TLG1/Syntaxin 6

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 256 transmembrane" amino acids 235 to 254 (20 residues), see Phobius details PF05739: SNARE" amino acids 202 to 253 (52 residues), 35.8 bits, see alignment E=3.2e-13

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (256 amino acids)

>mRNA_1219 KOG3202 SNARE protein TLG1/Syntaxin 6 (Rhodosporidium toruloides IFO0880)
MAPPSSSSGPVTAARLSHLSSTTLSSVLDLTRLSSLSLPSPPNLTHTIQRNLSTLARGIE
ELEDAGTESKEVVEGLRAQWERIRGLVEPLGVEVTERLREDASAKGKTGRLVETDEEEGD
DLVAVSGSSPHVAISVQDDRRDLAQMEEDEEEMDRANQEVMQMQKRMIEDQDTQLDSLSS
AISRQHALSLRVAEELELHSSLLDDTDSALDRTESNLRRASGRLDQFTRRARNTGSTGLI
VALIILLVILIVIFKL