Protein Info for mRNA_1225 in Rhodosporidium toruloides IFO0880

Name: 9593
Annotation: KOG2195 Transferrin receptor and related proteins containing the protease-associated (PA) domain

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 456 PF04389: Peptidase_M28" amino acids 252 to 425 (174 residues), 92 bits, see alignment E=2.1e-30

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

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Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

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Protein Sequence (456 amino acids)

>mRNA_1225 KOG2195 Transferrin receptor and related proteins containing the protease-associated (PA) domain (Rhodosporidium toruloides IFO0880)
MLSVAIGRDNGEVSEGAEGVRDIAGLLYWLHPTTVETDSSLSSDSPSASSAQITFSSTNA
ALDTIPELEPMHLLDLPSKEGRLVLLSSDSTTADAQLSYMSSHPAYSQYSLVALPRLSTA
LDGPSPFPEVPAAAVNRVKAHLEGLTFQPLLSKVISGLDSEKELERMKRDVRTLSGEDQS
RVKPSERWVSRHSMSTGGHKAANWVLDQMSSYGFNCTHISYLPGYAPMVECVYLDSALGL
DDSDLDRSSSIEYNANETMILGAHFDSRGSFGFPTAPGADDDASGTALVLTVARLIHSYN
LKFARKLVLALFSGEEQGLLSSSHYASLLRQRSEDVALMLQVDMVGYRKPGEPMQLARPD
KIGLREAGWLVGNLSEVYVPELVVGYTPACCSDHQSFVSNSYASTWIFERNGAIADPCYH
NSCDLSAREGYSFEQISAHAKVAMGLVWEVAGGWVP