Protein Info for mRNA_1281 in Rhodosporidium toruloides IFO0880

Name: 9649
Annotation: HMMPfam-Peptidase M50B-like-PF13398

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 460 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 221 to 241 (21 residues), see Phobius details amino acids 251 to 273 (23 residues), see Phobius details amino acids 299 to 319 (21 residues), see Phobius details amino acids 326 to 344 (19 residues), see Phobius details amino acids 350 to 365 (16 residues), see Phobius details amino acids 372 to 390 (19 residues), see Phobius details amino acids 418 to 440 (23 residues), see Phobius details PF13398: Peptidase_M50B" amino acids 228 to 431 (204 residues), 88.6 bits, see alignment E=2.2e-29

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (460 amino acids)

>mRNA_1281 HMMPfam-Peptidase M50B-like-PF13398 (Rhodosporidium toruloides IFO0880)
MRTTSLLAFSLAFSLALASSPAASLDPATTVTSSLTASLIALATQPTLSAPSRQAQVPQL
DQAVETQAARREAMVERSSEAVVGGDGQVKRMEEEAGLKKRWQGWQTSTSTVWVTNTQDV
PAEVTIYTTYGEPPIVDGGTIVESIWKGQSTLTVPGPSYLTLTFYPTATTYSTSRTTIPT
ATRTKTASPAAASAPTSTVCAPGDADQKQFTGLKPTHDQSITLYVIAICIVGIAIGWNLF
ILRDLLYLLKVFTVAVHEMGHVLVAICLGYRIGVLSIDPKIGGLTRVVVLENREHPLPMA
ALPPGYLFSIIVGGVLTFCGFDTLASKIASFIVGLGFVAVFLRVEVPAKIMTLLALGLMI
GLWFVDHARGLRFFILFLGVMNSFYVLWDVADDAFFAKQNPCCPSLHFEAFPRLSPGIWS
MIYITLSFLLFVGFILAALATWKESPHAMYCQAQTFLPTR