Protein Info for mRNA_1283 in Rhodosporidium toruloides IFO0880

Name: 9651
Annotation: K02883 RP-L18e, RPL18 large subunit ribosomal protein L18e

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 187 PF17135: Ribosomal_L18" amino acids 2 to 186 (185 residues), 289.3 bits, see alignment E=1e-90 PF00828: Ribosomal_L27A" amino acids 53 to 124 (72 residues), 29.3 bits, see alignment E=1.3e-10

Best Hits

Swiss-Prot: 67% identical to RL18B_SCHPO: 60S ribosomal protein L18-B (rpl1802) from Schizosaccharomyces pombe (strain 972 / ATCC 24843)

KEGG orthology group: K02883, large subunit ribosomal protein L18e (inferred from 72% identity to ppl:POSPLDRAFT_118007)

Predicted SEED Role

"LSU ribosomal protein L18e" in subsystem Ribosome LSU eukaryotic and archaeal

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (187 amino acids)

>mRNA_1283 K02883 RP-L18e, RPL18 large subunit ribosomal protein L18e (Rhodosporidium toruloides IFO0880)
MGIDIERHHVKKGNRTAPKSEDPYLLLLVKLYRFLARRTDSRFNKVILRRLYMSRVNRPP
VSLSRIARQVSKSNAAFTDKHTVVTVSTVTDDVRLLEVPKLSIAALRFTRTARARIEKAG
GECITLDQLALRKPTGANTLLLRGPKNSREAVKHRGSGVNHAKPYVISKGKKEENARGRR
KSRGFKI