Protein Info for mRNA_1286 in Rhodosporidium toruloides IFO0880

Name: 9654
Annotation: HMMPfam-short chain dehydrogenase-PF00106,SUPERFAMILY--SSF51735

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 403 transmembrane" amino acids 20 to 38 (19 residues), see Phobius details amino acids 50 to 73 (24 residues), see Phobius details amino acids 79 to 98 (20 residues), see Phobius details amino acids 315 to 336 (22 residues), see Phobius details PF00106: adh_short" amino acids 53 to 131 (79 residues), 28.6 bits, see alignment E=9.7e-11 PF08659: KR" amino acids 54 to 131 (78 residues), 29.7 bits, see alignment E=6.1e-11

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (403 amino acids)

>mRNA_1286 HMMPfam-short chain dehydrogenase-PF00106,SUPERFAMILY--SSF51735 (Rhodosporidium toruloides IFO0880)
MPLASLVHCLSFTPASSTLSTLAFWGSLAALVVGLRAWSKGYVCKEERGLAGKTFLLTGG
FSGIGLAVFQHLAASGAQVIVLTADPSSPSTIQLLLLLRSSTSNERLYAEECDLASAASI
KRFVQGWKKDAREGMVKDLEARIDGIVFCDEAGETRWQEKARKLLTGRHMLVQLLMPVLL
RSAATSTSPIRIVNTLDSPFYAAVTPDTFDPASFVAEQSAEKADAPVVQARQLSSIVQGG
RIALASVLLWREFQARLSTSASKPSTGLPATGDARVATSSPILAFSVSPGVLRSSLRSLL
PFSSRHSPHSRLPSSLHALLSLLISLLTYPLVWIFGKSADEGAQVVLGAIIGEVERVGGG
GRVVKGPSGERVDADGLEGGDARLRMRVRGGALYREGREASSP