Protein Info for mRNA_1287 in Rhodosporidium toruloides IFO0880

Name: 9655
Annotation: KOG1087 Cytosolic sorting protein GGA2/TOM1

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 539 PF00790: VHS" amino acids 29 to 170 (142 residues), 144.7 bits, see alignment E=1.7e-46 PF03127: GAT" amino acids 254 to 330 (77 residues), 73.3 bits, see alignment E=1.7e-24

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (539 amino acids)

>mRNA_1287 KOG1087 Cytosolic sorting protein GGA2/TOM1 (Rhodosporidium toruloides IFO0880)
MASHHRATAGSSWATSSVSNWGQPATAKETLVAYIDRACDPSLHEPNLSLELEIADLINS
KKANTPRDAAVEVVKLVNHRNTHVAMLALHLLDILVKNCGYPFHLQISTKEFLNELVRRF
PERPPTFPPPPMKKILELVHEWKNTICVTSKHKEDLVHIRDMHRLLSYKGYRFPQFDRQA
VSVLNPTESLQTPDELEEEDREAQAAKLQELIRRGTPKDLAAAQELMKIMAGAEPEKKPN
YEEQVSKELDRVQQRVLLLNEMLNNANPKERFVEGDAYDQIAQKCRHVQPKLQKWIADSS
ENHPESMDRLLLINDLINNVIKRYEAFKAGDRSATAEIDPALAAGSAGAKARTQAKQVSL
IDFDDDEAFAAPSPSPAPAPTPSQPQPGARSNPLDDLASLSLSPSAPAGASGAGGTGSLF
DLNAAFSTPSSSSTNPPPSSLPPPLSFSNGNGMPAAPSTPQGGTFFSNPAYNQSTARGSS
PFGGGGGSLGSISLGGGASPSPSMSAMRGGGPPVPPKQGQGQGEGGKSKDAFADLLGDF