Protein Info for mRNA_1289 in Rhodosporidium toruloides IFO0880

Name: 9657
Annotation: K05681 ABCG2, CD338 ATP-binding cassette, subfamily G (WHITE), member 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1050 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details transmembrane" amino acids 335 to 357 (23 residues), see Phobius details amino acids 794 to 814 (21 residues), see Phobius details amino acids 828 to 849 (22 residues), see Phobius details amino acids 874 to 897 (24 residues), see Phobius details amino acids 908 to 930 (23 residues), see Phobius details amino acids 937 to 958 (22 residues), see Phobius details amino acids 1024 to 1045 (22 residues), see Phobius details PF00005: ABC_tran" amino acids 456 to 608 (153 residues), 82.9 bits, see alignment E=3.3e-27 PF01061: ABC2_membrane" amino acids 775 to 985 (211 residues), 131.2 bits, see alignment E=3.6e-42

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1050 amino acids)

>mRNA_1289 K05681 ABCG2, CD338 ATP-binding cassette, subfamily G (WHITE), member 2 (Rhodosporidium toruloides IFO0880)
MAPTAATLATLLVLVSLLATHSLAQSTCSNYGTLLSNGTCDCPPGFDPATSCTLAACDNP
LESNFARQPFSAVLAGNASTGCARQCTSGFVGPNCNVCTENQACASALQSVSGGGGGAGS
SSNGMSLTNGLGEPVCSTGPWTWTEGFASCDVVNPTLQSVFSGFTTLTIQKTVSPTQSLS
SPFGTNGTMTAQLWYAPLSGNTTVIEQFFCAAEECAQTNTTTGNAGGEVDWSCQNLRCTC
IPGTTFCGAPGSALDLTSTIDGLSGPLDITCDAATGTMCAFKQDVLKTLFGANGLSLSGC
RWGECVLPGTVSALADALAGKGPTGGGGGGGLSGGVIAGLAVLGGVVGALLVLLALGKAS
QRRARRKAREEDEKVLLVASAGAATLHSGAGGSCGSASSSSHQDTSEKPIDSPPSSLPAI
GLEWSNLSYTLPPTPRFSLLPSSSSSAPREGKQILSSLSARVEPGSFVSILGPSGAGKST
LVDLLAGVRKSGKREGRVELVNLGGGEGEEVRIGYVDQADELPQTSTVREAVMLAAELKL
GEIPHEKKRDRVFEVLTQLGLLDVADSIIGSPEGSGTRGISGGERRRVSIALELVARPAV
LIADEPTSGLDSTSALRILTALKALTLPSPSPSSRPTRRTTVICTIHQPSSQLYHLFDDV
LLLAQGGTQLWFGKAGRAREWWEGKGVRCPEGWNPADFLLDLATSPPAAFLPLRPSPTTR
KSATSLPSSPPHTTPELPYTSTPSSRPFLPTPRSLLRNTNAHQRASRKPTTTAMTQVEVL
AKREARNLVRDKGLVLMHNVVPTIVGLFVGGMFYKVNLTIGGFQSRVGALFFLGCLIAFA
SLSALSNFAHAKRIFIRERARGYYSPVTWLASKLVFDIVPLRLVPTIVLATIVYWMVGLA
HDAAHFFKFLLILILFAICTTLWNFVLAAAIDDTGSAILVSSVLNLFQMAFAGFFINLRS
IPPVLRWLQWLAPLKYALEAVTINEVGAGLMIVDELAGAKVQISAEIIMQTLFGFKQNAY
YRDVLVLFAFIVGFALILIATVLVRLRELR