Protein Info for mRNA_1296 in Rhodosporidium toruloides IFO0880

Name: 9664
Annotation: K19703 FA2H, SCS7 4-hydroxysphinganine ceramide fatty acyl 2-hydroxylase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 372 transmembrane" amino acids 164 to 189 (26 residues), see Phobius details amino acids 201 to 224 (24 residues), see Phobius details amino acids 243 to 260 (18 residues), see Phobius details amino acids 266 to 283 (18 residues), see Phobius details amino acids 290 to 310 (21 residues), see Phobius details PF00173: Cyt-b5" amino acids 18 to 90 (73 residues), 76.3 bits, see alignment E=1.7e-25 PF04116: FA_hydroxylase" amino acids 214 to 355 (142 residues), 57.4 bits, see alignment E=2.1e-19

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (372 amino acids)

>mRNA_1296 K19703 FA2H, SCS7 4-hydroxysphinganine ceramide fatty acyl 2-hydroxylase (Rhodosporidium toruloides IFO0880)
MATAADRATKRTRIYLRSEVEKHNTAKDCWVVHNNRVYDVSQFLEDHPGGDDLILNWAGK
DITEVMQDPIEHSHSDSAYQVLDEYQIGRLGQEECITNPDFEFTDDWHPDDTDNVKDWER
NQFLDLNRPLIMQVWNSDFSKAFYLQQVHQPRHLPRPARLFGPWYLEIFTMTSWYVVPLI
WLPVAGYLLRQSIIQQTAAGLSTSTALSRSGACFLVGNVIWTFLEYTMHRFLFHIDEHLP
DRPFFLMLHFLLHGIHHYIPMDRMRLVMPPLLFFALQTPFTKLAHKLFPAWMANGIISGA
FVFYVAYDVMHYALHHTKLPEYVRKQKSYHMEHHYKEPELGFGVTSPFWDRVFGTTFVSR
PKDAPPKLSAKA