Protein Info for mRNA_1308 in Rhodosporidium toruloides IFO0880

Name: 9676
Annotation: KOG0342 ATP-dependent RNA helicase pitchoune

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 756 signal peptide" amino acids 1 to 31 (31 residues), see Phobius details PF00270: DEAD" amino acids 139 to 328 (190 residues), 119.5 bits, see alignment E=1.4e-38 PF00271: Helicase_C" amino acids 394 to 500 (107 residues), 68.1 bits, see alignment E=8.4e-23

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (756 amino acids)

>mRNA_1308 KOG0342 ATP-dependent RNA helicase pitchoune (Rhodosporidium toruloides IFO0880)
MFRIARASLRTLARPALAPAARIAQPALLANAARPQTAALRATPSLYTLGARLQSTVAAE
AEAEPVESAEQEEQESKAPVPKTYASIQGSFHAPVFRAITQKPFQYATMTDVQAEVMARL
PRLAANPSVESDVPDEVRHAQDLLVRAKTGTGKTLAFLVPALEGRLKQLEDFVEQYKKDN
EGASPQEVRRALAGFAGSTVGALIISPTRELATQIANEAIALTTHLPQFGVRLLVGGASK
GQQIRDWRRAPSNDIVVATPGRCVDLLQSESSIGRPVSTARLLILDEADTLLDMGFADDI
NTISKMLPPVEQRQTFLFSATVSSNIRQIARKSLKRDHEYIDTVPADEVDTHLHIPQFYT
TLPTAEHQLEHVFRLLAHDQLLHARTAAENGGTGGGKAVVFLPTTRMTQLFAQLLVAMKP
HLPWGRDTNIVEIHSKKDQNQRTRASDQFRSAKTGYSILVTSDVSARGVDYPNVTRVIQV
GVPGTRDLYIHRVGRTGRAGKQGRGDLVLLPWEAGFLSWQLKDIPLKENTVGQLKRELEQ
LAADWDANPAEFAAPPAAAAPQRRSVGRYGSRDQSYGRVPTIPAQLSPRLNSLSESLKTN
VLPTLDSYDIREVFATLCGYYINKAHELRCTKEVVLQGLKNWAVEALGAEEEPHVSSAFL
QKVGMSSGKTKNRSRRALDFGYRGTSDRDRGEGSFGGGFSSGGYGGGGYGGGGYNPNDRY
GGGPSFDRAPRRSSRSEGGAYWEGRGKVNKPSRSRY