Protein Info for mRNA_1343 in Rhodosporidium toruloides IFO0880

Name: 9711
Annotation: K00698 CHS1 chitin synthase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1008 transmembrane" amino acids 593 to 612 (20 residues), see Phobius details amino acids 624 to 649 (26 residues), see Phobius details amino acids 668 to 688 (21 residues), see Phobius details amino acids 700 to 726 (27 residues), see Phobius details amino acids 732 to 755 (24 residues), see Phobius details amino acids 767 to 786 (20 residues), see Phobius details amino acids 868 to 887 (20 residues), see Phobius details amino acids 904 to 928 (25 residues), see Phobius details PF08407: Chitin_synth_1N" amino acids 214 to 283 (70 residues), 93 bits, see alignment 1.8e-30 PF01644: Chitin_synth_1" amino acids 284 to 446 (163 residues), 236.2 bits, see alignment E=3.9e-74 PF13632: Glyco_trans_2_3" amino acids 424 to 650 (227 residues), 27.3 bits, see alignment E=6.7e-10 PF03142: Chitin_synth_2" amino acids 424 to 623 (200 residues), 65.9 bits, see alignment E=6e-22 amino acids 709 to 804 (96 residues), 28.6 bits, see alignment E=1.2e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1008 amino acids)

>mRNA_1343 K00698 CHS1 chitin synthase (Rhodosporidium toruloides IFO0880)
MPYQPLENGRSTYPAYPSSAPSYDSPDAGGIRPVSYEDAYDDAAFIGDEGAGGARPPSFH
SHDGERVGGMNGGAGVYLGEGYDSGIIYDSVPQTEPLNVRSPPPAPAARRSVYEPDLDLH
LDNRGAAPQYPRRRGGVRDERDWEEDVKNPEDFEDSFEAGEADDSRLDECGGHGGAGEGD
EEDDGLHSPAISYKGGFGAPPQTAHTRRRNVQQRRVKLTEGNLVVPCSIPSRLLSFLPRK
DSDEFVTTRYTAVTCGPDEFNDKSYTLRPTLYNRQTELFVVITMYNEDEELFCRTLHGVM
KNVAQLCKRKKSATWGPEGWKKIVVCIVADGRKAVHPRVLDCLSALGVYQPSVMTNAIDN
QPVACHLFENTIQMSIAPDLTFRGLEKGIMPCQVMFALKEKNAKKINSHRWALQAFAPQL
DPRVVVLLDVGTKPAAGSLYKLWKAFDMNSNVGGACGEIVAMKGKFWLGLLNPLVAAQNF
EYKISNILDKPLESICGYISVLPGAFSAYRYIALKNDELGHGPLASYFKGEHLAGVDASL
TTSNMYLAEDRILCWELVAKRGDAWVLKFVKSAKGETDVPDQVAEFIGQRRRWLNGSFFA
GVYALMHTLQLFQTTHSRKKIIFLLGQAIYNFINVLFAWLGLSSYWIFFMVLTKSLEDPT
FHLKGVSVVNVFMQYAYIGAVIACFLMSMGNRPKAARWKYLGVMIVFSLTTAYMIGAAVF
CVYQAVKQSADSLIMAQICISLASTYGCYLVASLIAGDPWHMVTSLLQYLLLAPSYINLL
NIYAFANLHDFSWGTKEQTTSEIDLGITKKVNQNEVDMALPADQSDIDILYDRSLHNLKT
RPMIIPPPLSDKAKTEAVMDRYQSIRTNILLSWVLSNAVLIATILNGDYSGSFSSSSGNT
RAKVYLVVVLICVAILSLIRFLGSTAYVVDGYVRFIGHQVQRRLFARRQVSQQNHLRRRP
VLSEAGTEIKSEKGVAPAEDSASSYVESSGASSVVNGPRPDGAWFARR