Protein Info for mRNA_1356 in Rhodosporidium toruloides IFO0880

Name: 9724
Annotation: HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 950 985 transmembrane" amino acids 396 to 415 (20 residues), see Phobius details PF00172: Zn_clus" amino acids 68 to 107 (40 residues), 29 bits, see alignment (E = 9.1e-11) PF04082: Fungal_trans" amino acids 377 to 573 (197 residues), 42.1 bits, see alignment E=5.7e-15

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (985 amino acids)

>mRNA_1356 HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,HMMPfam-Fungal specific transcription factor domain-PF04082,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SMART-Fungal specific transcription factor domain-SM00906,SUPERFAMILY--SSF57701 (Rhodosporidium toruloides IFO0880)
MNPASTSSTPGPPTHPDARERERDTRGSPSLPPQYGPDGKLKTGNAYVNSFKGGIRVETA
NGGERTSRACLACRKLKTRCDGAEDPPCKRCRAGNHECVFVESKRGKRPSRGKQSDANLV
DKFRMVEKTLATVLDSIGSGEKPDPSAISQLQASLAEGLVPEPSAAGRRGSVGSTSQAMR
YSLPPNDDHSPSSGSEVNDLATSTDGGRKAKRARHNSSTTSNGTFESPSMGGTLALSPST
TVQSGSASASTKFAHLPLQGGAGGGGQGPSPSGAGRRASQGPPSNPSPGSATVPIPTSQP
TPAGSSLAMLADASLAAQIDGRSQLTGLDSNFNLSTVTNAIQRQKDRLGAPVEGGLTPAV
LSKGIVTPELAVELFTIFFDYAYIHLPLLDPARHTAPWVCATSPFLFTVILAVASRFHAD
PTLHEKIYEEAHKCFVECVSEGERSVESVQACCILTVWTYPPTGESVAAGREERPKRASL
YFTMAIRMALELNLFRPASWVDRHLSKPGNSSKTNPWVTLPKDGPEAVTEQETWDALNRE
RTWLMVFVIDRNMATVMGRPYQILEAKPLLLPLHPQCLPFDLGVIAHVEMQTIVGQVMDT
FRDRLYGLSCASDEMPSPVVMKLFNSRMDEWKARWCPMPGEPIANNLLFYQYSCKLFLNT
IPLHTLLRNGDASDDPDSVSSTIASAKSLLQLGHAYAELSVLRHCPDVNFLLMLYSSVFL
VKVRVSNSRFAQLVDPDELEQLLLQLMKDCQEAAQGDPRHAAMTCFVILRALGTSWKALE
TGGGRSRGTSTRGDEDENPLAAAQQQPHGPAGLGIPNGPPPQQGPLDPHADFAALNSTLA
SSAGGFPHVSLASAMPPSPAPMFPGQFSSAGNPFSNPFAAASNAPTPNASYRPGTISGVQ
TPSAFVGNGMFEGATPAGPGVAGGPGGNSLGLGGPGGGPFDGVDHFLNDSHFFGSVLVGK
GASGFFDWPGVAGSLYVSSLSPDEC