Protein Info for mRNA_1373 in Rhodosporidium toruloides IFO0880

Name: 9741
Annotation: K05661 ABCB6 ATP-binding cassette, subfamily B (MDR/TAP), member 6

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 967 transmembrane" amino acids 17 to 35 (19 residues), see Phobius details amino acids 96 to 119 (24 residues), see Phobius details amino acids 133 to 153 (21 residues), see Phobius details amino acids 174 to 198 (25 residues), see Phobius details amino acids 210 to 236 (27 residues), see Phobius details amino acids 293 to 310 (18 residues), see Phobius details amino acids 316 to 335 (20 residues), see Phobius details amino acids 356 to 372 (17 residues), see Phobius details amino acids 392 to 409 (18 residues), see Phobius details amino acids 429 to 451 (23 residues), see Phobius details amino acids 457 to 478 (22 residues), see Phobius details amino acids 545 to 567 (23 residues), see Phobius details amino acids 573 to 591 (19 residues), see Phobius details PF00664: ABC_membrane" amino acids 324 to 589 (266 residues), 91.5 bits, see alignment E=7.5e-30 PF00005: ABC_tran" amino acids 662 to 822 (161 residues), 111.8 bits, see alignment E=3.9e-36

Best Hits

Predicted SEED Role

"Lipid A export ATP-binding/permease protein MsbA" in subsystem ZZ gjo need homes

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (967 amino acids)

>mRNA_1373 K05661 ABCB6 ATP-binding cassette, subfamily B (MDR/TAP), member 6 (Rhodosporidium toruloides IFO0880)
MSPPTDLDTLYTTLVDLRLALPVVLLALLGIRWLSKAFLAWMERVQSGGWTAEEDVYSPP
ENDAAAASKAQDGEADGDDVTPVVVKGRTVRKAVVLTLEGLVAATYFADGVAQVIATLVT
SHFTPSDRLYGNIIPYSAGGLAAYALLGIGMAYEAKLSRKELDITSEAGMWPTLYPRVIS
FAAVTGEAAVLATFARIVVRDPTIDSRHAVLPIIHLSIVSFRILLLLTVLAFQFSFLYRS
TYLPSHGVPPSERTSLLNGSTPPNGYSAIHSSGAPSVLRGTRLPSNRPPDPKSLSILTLF
QRVKLLFPYLWPSRSYVLQGLALVCFSLMLLRRYVNVLGPIYFGRIISDLAYQRPPFFNI
GIYVLIQFLQDSNNMLYRYLWLPIEQYSEREMALMSFDILLNLSLSYHTKRRTGELLRIL
SRSEAINDFFELLLFSFVPVLIDLPVAFVVISVRYGATIVAVVTFVSAIYVATSVTLAES
RTKLYRKLRDESQFMHQLKSDVLFNWETAKIFTSEAFEMKRLRDAMWRYQKGYFRVYSSW
NSLSLLQNSITAFGLLVCSFILAQRVVTGEMDVGNFVAFVSYLNALYSPLNQISSLYRRV
MNNAVDTEQLIDLLNEEREINDRPGAIDLEIDPSVGADIEFNDVRFSYGKEATNSADEVE
VLKGITFKVPRGKSVALVGPSGGGKSTITRLLFRFYDVKSGSIKINGTDVRDLTQRSLRA
QIGLVPQETVLFNSSVRMNIAYGGINRLDEKGMGGEDLTMEKVIDAAKAAAMHDRIMSFP
QQYETLVGERGMRLSGGEKQRVAIARTLLKDPPILILDEATSALDTFNERIVQARLRELS
QGRTTLTIAHRLSTIIDSDIINVLKEGVIVESGSHAELLELGGVYAELWKKQIEGQTPSV
PASVAATPNGAASQSRAASPTPPAVDTPETASSVATPEPTAPSTGASSGVNGSSGGGKKR
KGGKKRR