Protein Info for mRNA_1380 in Rhodosporidium toruloides IFO0880

Name: 9748
Annotation: K02155 ATPeV0C, ATP6L V-type H+-transporting ATPase 16kDa proteolipid subunit

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 165 transmembrane" amino acids 12 to 37 (26 residues), see Phobius details amino acids 58 to 81 (24 residues), see Phobius details amino acids 92 to 117 (26 residues), see Phobius details amino acids 130 to 155 (26 residues), see Phobius details TIGR01100: V-type ATPase, C subunit" amino acids 16 to 121 (106 residues), 163.4 bits, see alignment E=8.3e-53 PF00137: ATP-synt_C" amino acids 21 to 79 (59 residues), 46.9 bits, see alignment E=1.5e-16 amino acids 96 to 155 (60 residues), 69.5 bits, see alignment E=1.3e-23

Best Hits

Swiss-Prot: 81% identical to VATL_NEUCR: V-type proton ATPase 16 kDa proteolipid subunit (vma-3) from Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987)

KEGG orthology group: K02155, V-type H+-transporting ATPase 16kDa proteolipid subunit [EC: 3.6.3.14] (inferred from 84% identity to uma:UM00508.1)

MetaCyc: 74% identical to H+-translocating V-ATPase subunit c (Homo sapiens)

Predicted SEED Role

No annotation

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.3.14

Use Curated BLAST to search for 3.6.3.14

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (165 amino acids)

>mRNA_1380 K02155 ATPeV0C, ATP6L V-type H+-transporting ATPase 16kDa proteolipid subunit (Rhodosporidium toruloides IFO0880)
MSSVAFSEGCPIYAPFFGAMGCTAAIVFTCLGASYGTAKSGVGIAAMGVLRPDLMMKCII
PVVMAGIIAIYGLVVSVLISGGLASPMSLYAGFIQLGAGLSVGLAGLSAGFAIGIVGDAG
VRGVAQQSRVFVGMVLILIFAEVLGLYGLIVALIMNSKAADAPGC